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Giovanni Carapezza
Giovanni Carapezza
Cogentech Ltd Benefit Corporation
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Year
Robust design of microbial strains
J Costanza, G Carapezza, C Angione, P Lió, G Nicosia
Bioinformatics 28 (23), 3097-3104, 2012
642012
Pareto optimal design for synthetic biology
A Patane, A Santoro, J Costanza, G Carapezza, G Nicosia
IEEE transactions on biomedical circuits and systems 9 (4), 555-571, 2015
202015
A benchmarking of pipelines for detecting ncRNAs from RNA-Seq data
S Di Bella, A La Ferlita, G Carapezza, S Alaimo, A Isacchi, A Ferro, ...
Briefings in Bioinformatics 21 (6), 1987-1998, 2020
182020
Multi-objective optimization of genome-scale metabolic models: the case of ethanol production
A Patané, G Jansen, P Conca, G Carapezza, J Costanza, G Nicosia
Annals of Operations Research 276, 211-227, 2019
172019
Pareto optimality in organelle energy metabolism analysis
C Angione, G Carapezza, J Costanza, P Lió, G Nicosia
IEEE/ACM transactions on computational biology and bioinformatics 10 (4 …, 2013
172013
Multi-target analysis and design of mitochondrial metabolism
C Angione, J Costanza, G Carapezza, P Lió, G Nicosia
PloS one 10 (9), e0133825, 2015
162015
Establishment and genomic characterization of the new chordoma cell line Chor-IN-1
R Bosotti, P Magnaghi, S Di Bella, L Cozzi, C Cusi, F Bozzi, N Beltrami, ...
Scientific reports 7 (1), 9226, 2017
152017
Efficient behavior of photosynthetic organelles via Pareto optimality, identifiability, and sensitivity analysis
G Carapezza, R Umeton, J Costanza, C Angione, G Stracquadanio, ...
ACS synthetic biology 2 (5), 274-288, 2013
132013
Multi-objective optimisation, sensitivity and robustness analysis in FBA modelling
J Costanza, G Carapezza, C Angione, P Liò, G Nicosia
Computational Methods in Systems Biology: 10th International Conference …, 2012
132012
Computing with metabolic machines
C Angione, G Carapezza, J Costanza, P Lió, G Nicosia
Turing-100. Volume 10 of EPiC Series 10, 1-15, 2012
112012
A design automation framework for computational bioenergetics in biological networks
C Angione, J Costanza, G Carapezza, P Lió, G Nicosia
Molecular BioSystems 9 (10), 2554-2564, 2013
92013
Multi-objective optimization and analysis for the design space exploration of analog circuits and solar cells
A Patanè, A Santoro, P Conca, G Carapezza, A La Magna, V Romano, ...
Engineering Applications of Artificial Intelligence 62, 373-383, 2017
82017
Analysis and design of molecular machines
C Angione, J Costanza, G Carapezza, P Lió, G Nicosia
Theoretical Computer Science 599, 102-117, 2015
52015
Pareto epsilon-dominance and identifiable solutions for BioCAD modeling
C Angione, J Costanza, G Carapezza, P Lió, G Nicosia
Proceedings of the 50th Annual Design Automation Conference, 1-9, 2013
42013
KAOS: a new automated computational method for the identification of overexpressed genes
A Nuzzo, G Carapezza, S Di Bella, A Pulvirenti, A Isacchi, R Bosotti
BMC bioinformatics 17, 5-14, 2016
32016
Design and strain selection criteria for bacterial communication networks
C Angione, G Carapezza, J Costanza, P Lió, G Nicosia
Nano Communication Networks 4 (4), 155-163, 2013
32013
Rational design of organelle compartments in cells
C Angione, G Carapezza, J Costanza, P Lió, G Nicosia
EMBnet. journal 18 (B), 20-22, 2012
32012
Mining potentially actionable kinase gene fusions in cancer cell lines with the KuNG FU database
A Somaschini, S Di Bella, C Cusi, L Raddrizzani, A Leone, G Carapezza, ...
Scientific Data 7 (1), 420, 2020
22020
Metabolic circuit design automation by multi-objective BioCAD
A Patané, P Conca, G Carapezza, A Santoro, J Costanza, G Nicosia
Machine Learning, Optimization, and Big Data: Second International Workshop …, 2016
22016
Comprehensive kinome NGS targeted expression profiling by KING-REX
G Carapezza, C Cusi, E Rizzo, L Raddrizzani, S Di Bella, A Somaschini, ...
BMC genomics 20, 1-12, 2019
12019
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