Niranjan Nagarajan
Niranjan Nagarajan
Senior Group Leader, Genome Institute of Singapore
Verifierad e-postadress på gis.a-star.edu.sg
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Statistical methods for detecting differentially abundant features in clinical metagenomic samples
JR White, N Nagarajan, M Pop
PLoS Comput Biol 5 (4), e1000352, 2009
11582009
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
R Ming, S Hou, Y Feng, Q Yu, A Dionne-Laporte, JH Saw, P Senin, ...
Nature 452 (7190), 991-996, 2008
10362008
Comprehensive characterization of cancer driver genes and mutations
MH Bailey, C Tokheim, E Porta-Pardo, S Sengupta, D Bertrand, ...
Cell 173 (2), 371-385. e18, 2018
10092018
The draft genome of sweet orange (Citrus sinensis)
Q Xu, LL Chen, X Ruan, D Chen, A Zhu, C Chen, D Bertrand, WB Jiao, ...
Nature genetics 45 (1), 59-66, 2013
7522013
Fast and accurate de novo genome assembly from long uncorrected reads
R Vaser, I Sović, N Nagarajan, M Šikić
Genome research 27 (5), 737-746, 2017
7272017
LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets
A Wilm, PPK Aw, D Bertrand, GHT Yeo, SH Ong, CH Wong, CC Khor, ...
Nucleic acids research 40 (22), 11189-11201, 2012
6322012
Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes
ZJ Zang, I Cutcutache, SL Poon, SL Zhang, JR McPherson, J Tao, ...
Nature genetics 44 (5), 570-574, 2012
6012012
A common BIM deletion polymorphism mediates intrinsic resistance and inferior responses to tyrosine kinase inhibitors in cancer
KP Ng, AM Hillmer, CTH Chuah, WC Juan, TK Ko, ASM Teo, ...
Nature medicine 18 (4), 521, 2012
5662012
Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly
ET Lam, A Hastie, C Lin, D Ehrlich, SK Das, MD Austin, P Deshpande, ...
Nature biotechnology 30 (8), 771-776, 2012
5282012
Sequence assembly demystified
N Nagarajan, M Pop
Nature Reviews Genetics 14 (3), 157-167, 2013
4862013
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
3912017
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
I Sović, M Šikić, A Wilm, SN Fenlon, S Chen, N Nagarajan
Nature communications 7 (1), 1-11, 2016
2832016
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ...
Nature methods 12 (7), 623-630, 2015
2202015
Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences
S Gao, WK Sung, N Nagarajan
Journal of Computational Biology 18 (11), 1681-1691, 2011
2172011
A randomized, double-blind placebo controlled trial of balapiravir, a polymerase inhibitor, in adult dengue patients
NM Nguyen, CNB Tran, LK Phung, KTH Duong, HA Huynh, J Farrar, ...
The Journal of infectious diseases 207 (9), 1442-1450, 2013
1892013
In vivo mapping of eukaryotic RNA interactomes reveals principles of higher-order organization and regulation
JGA Aw, Y Shen, A Wilm, M Sun, XN Lim, KL Boon, S Tapsin, YS Chan, ...
Molecular cell 62 (4), 603-617, 2016
1842016
Perspective on oncogenic processes at the end of the beginning of cancer genomics
L Ding, MH Bailey, E Porta-Pardo, V Thorsson, A Colaprico, D Bertrand, ...
Cell 173 (2), 305-320. e10, 2018
1732018
Genus-wide comparative genomics of Malassezia delineates its phylogeny, physiology, and niche adaptation on human skin
G Wu, H Zhao, C Li, MP Rajapakse, WC Wong, J Xu, CW Saunders, ...
PLoS Genet 11 (11), e1005614, 2015
1712015
Whole metagenome profiling reveals skin microbiome-dependent susceptibility to atopic dermatitis flare
KR Chng, ASL Tay, C Li, AHQ Ng, J Wang, BK Suri, SA Matta, ...
Nature microbiology 1 (9), 1-10, 2016
1602016
Scaffolding and validation of bacterial genome assemblies using optical restriction maps
N Nagarajan, TD Read, M Pop
Bioinformatics 24 (10), 1229-1235, 2008
1432008
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Artiklar 1–20