| Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB TZ DeSantis, P Hugenholtz, N Larsen, M Rojas, EL Brodie, K Keller, ... Applied and environmental microbiology 72 (7), 5069-5072, 2006 | 11973 | 2006 |
| Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite F Warnecke, P Luginbühl, N Ivanova, M Ghassemian, TH Richardson, ... Nature 450 (7169), 560-565, 2007 | 1562 | 2007 |
| IMG/M: a data management and analysis system for metagenomes VM Markowitz, NN Ivanova, E Szeto, K Palaniappan, K Chu, D Dalevi, ... Nucleic acids research 36 (suppl_1), D534-D538, 2007 | 460 | 2007 |
| ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes E Kristiansson, P Hugenholtz, D Dalevi Bioinformatics 25 (20), 2737-2738, 2009 | 163 | 2009 |
| Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting J Samuelsson, D Dalevi, F Levander, T Rögnvaldsson Bioinformatics 20 (18), 3628-3635, 2004 | 101 | 2004 |
| Bridging the gap between systems biology and medicine G Clermont, C Auffray, Y Moreau, DM Rocke, D Dalevi, D Dubhashi, ... Genome medicine 1 (9), 88, 2009 | 85 | 2009 |
| Annotation of metagenome short reads using proxygenes D Dalevi, NN Ivanova, K Mavromatis, SD Hooper, E Szeto, P Hugenholtz, ... Bioinformatics 24 (16), i7-i13, 2008 | 57 | 2008 |
| Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation M Cvijović, D Dalevi, E Bilsland, GJL Kemp, P Sunnerhagen BMC bioinformatics 8 (1), 295, 2007 | 56 | 2007 |
| Estimating DNA coverage and abundance in metagenomes using a gamma approximation SD Hooper, D Dalevi, A Pati, K Mavromatis, NN Ivanova, NC Kyrpides Bioinformatics 26 (3), 295-301, 2010 | 40 | 2010 |
| Bayesian classifiers for detecting HGT using fixed and variable order markov models of genomic signatures D Dalevi, D Dubhashi, M Hermansson Bioinformatics 22 (5), 517-522, 2006 | 40 | 2006 |
| A 6-gene signature identifies four molecular subgroups of neuroblastoma F Abel, D Dalevi, M Nethander, R Jörnsten, K De Preter, J Vermeulen, ... Cancer cell international 11 (1), 9, 2011 | 37 | 2011 |
| A molecular study of microbe transfer between distant environments SD Hooper, J Raes, KU Foerstner, ED Harrington, D Dalevi, P Bork PLoS One 3 (7), e2607, 2008 | 28 | 2008 |
| ERBB3 is a marker of a ganglioneuroblastoma/ganglioneuroma-like expression profile in neuroblastic tumours A Wilzén, C Krona, B Sveinbjörnsson, E Kristiansson, D Dalevi, I Øra, ... Molecular cancer 12 (1), 70, 2013 | 22 | 2013 |
| Early Detection of Sepsis Using Artificial Intelligence: A Scoping Review Protocol I Pepic, R Feldt, L Ljungström, R Torkar, D Dalevi, HM Söderholm, ... | 21 | 2020 |
| The peres-shields order estimator for fixed and variable length markov models with applications to DNA sequence similarity D Dalevi, D Dubhashi International Workshop on Algorithms in Bioinformatics, 291-302, 2005 | 21 | 2005 |
| Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool D Dalevi, TZ DeSantis, J Fredslund, GL Andersen, VM Markowitz, ... BMC bioinformatics 8 (1), 1-6, 2007 | 19 | 2007 |
| A new order estimator for fixed and variable length Markov models with applications to DNA sequence similarity D Dalevi, D Dubhashi, M Hermansson Statistical applications in genetics and molecular biology 5 (1), 2006 | 15 | 2006 |
| Expected gene-order distances and model selection in bacteria D Dalevi, N Eriksen Bioinformatics 24 (11), 1332-1338, 2008 | 12 | 2008 |
| Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach SD Hooper, IJ Anderson, A Pati, D Dalevi, K Mavromatis, NC Kyrpides Nucleic acids research 37 (7), 2096-2104, 2009 | 7 | 2009 |
| Combining evidence of preferential gene-tissue relationships from multiple sources J Guo, M Hammar, L Öberg, SS Padmanabhuni, M Bjäreland, D Dalevi PloS one 8 (8), e70568, 2013 | 6 | 2013 |
