Rainer Breitling

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	All	Since 2016
Citations	19362	10290
h-index	63	44
i10-index	152	116

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Co-authors

Eriko TakanoProfessor of Synthetic Biology, Manchester Institute of Biotechnology, University of ManchesterVerified email at manchester.ac.uk
Marnix MedemaAssistant Professor at Wageningen UniversityVerified email at wur.nl
ritsert jansenProfessor of Bioinformatics, Dean of Talent DevelopmentVerified email at rug.nl
David GilbertProfessor of Computer Science, Brunel UniversityVerified email at brunel.ac.uk
Andris JankevicsExperimental Officer, Phenome Centre Birmingham,University of BirminghamVerified email at bham.ac.uk
Pawel HerzykSenior Lecturer & Head of Sequencing, MCSB and Glasgow Polyomics at the University of GlasgowVerified email at glasgow.ac.uk
Richard ScheltemaUtrecht UniversityVerified email at uu.nl
Tilmann WeberProfessor / Co-PI @ DTU Biosustain, Technical University of DenmarkVerified email at biosustain.dtu.dk
Kai BlinResearcher at the Novo Nordisk Foundation Center for BiosustainabilityVerified email at biosustain.dtu.dk
Patrick ArmengaudGlasgow, Amiens, Versailles, MontpellierVerified email at versailles.inra.fr
Yang Li, PhDProfessor, Director of CiiM, Helmholtz Centre for Infection Research (HZI)Verified email at helmholtz-hzi.de
Darren CreekAssociate Professor, Drug Delivery, Disposition & Dynamics, Monash Institute of PharmaceuticalVerified email at monash.edu
David George WatsonStrathclydeVerified email at strath.ac.uk
Michael A FischbachStanford UniversityVerified email at fischbachgroup.org
Nigel ScruttonProfessor of Enzymology, Manchester Institute of Biotechnology (MIB) and School of ChemistryVerified email at manchester.ac.uk
Karl BurgessSenior Lecturer, University of EdinburghVerified email at ed.ac.uk
Ronald PlasterkVerified email at tiscali.nl
Mohammad Tauqeer AlamBiology Department, United Arab Emirates UniversityVerified email at uaeu.ac.ae
Jingyuan Fu, PhDAssociate Professor, University Medical Center Groningen, NetherlandsVerified email at umcg.nl
Fiona AchcarUniversity of GlasgowVerified email at glasgow.ac.uk

Rainer Breitling

Professor of Systems Biology, Manchester Institute of Biotechnology, University of Manchester

Verified email at manchester.ac.uk - Homepage

Systems Biology Dynamic Modelling Metabolomics Transcriptomics Synthetic Biology


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antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters T Weber, K Blin, S Duddela, D Krug, HU Kim, R Bruccoleri, SY Lee, ... Nucleic acids research 43 (W1), W237-W243, 2015	1641	2015
Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments R Breitling, P Armengaud, A Amtmann, P Herzyk FEBS letters 573 (1-3), 83-92, 2004	1634	2004
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences MH Medema, K Blin, P Cimermancic, V de Jager, P Zakrzewski, ... Nucleic Acids Research 39 (suppl 2), W339-W346, 2011	1227	2011
antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification K Blin, T Wolf, MG Chevrette, X Lu, CJ Schwalen, SA Kautsar, ... Nucleic acids research 45 (W1), W36-W41, 2017	828	2017
antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers K Blin, MH Medema, D Kazempour, MA Fischbach, R Breitling, E Takano, ... Nucleic acids research 41 (W1), W204-W212, 2013	805	2013
RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis F Hong, R Breitling, CW McEntee, BS Wittner, JL Nemhauser, J Chory Bioinformatics 22 (22), 2825-2827, 2006	731	2006
Minimum information about a biosynthetic gene cluster MH Medema, R Kottmann, P Yilmaz, M Cummings, JB Biggins, K Blin, ... Nature chemical biology 11 (9), 625-631, 2015	485	2015
The potassium-dependent transcriptome of Arabidopsis reveals a prominent role of jasmonic acid in nutrient signaling P Armengaud, R Breitling, A Amtmann Plant physiology 136 (1), 2556-2576, 2004	478	2004
Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics WB Dunn, A Erban, RJM Weber, DJ Creek, M Brown, R Breitling, ... Metabolomics 9 (1), 44-66, 2013	443	2013
C. elegans model identifies genetic modifiers of α-synuclein inclusion formation during aging TJ Van Ham, KL Thijssen, R Breitling, RMW Hofstra, RHA Plasterk, ... PLoS genetics 4 (3), e1000027, 2008	346	2008
Regulation of ubiquitin-binding proteins by monoubiquitination D Hoeller, N Crosetto, B Blagoev, C Raiborg, R Tikkanen, S Wagner, ... Nature cell biology 8 (2), 163-169, 2006	341	2006
Mapping determinants of gene expression plasticity by genetical genomics in C. elegans Y Li, OA Alvarez, EW Gutteling, M Tijsterman, J Fu, JAG Riksen, ... PLoS Genet 2 (12), e222, 2006	302	2006
Toward Global Metabolomics Analysis with Hydrophilic Interaction Liquid Chromatography–Mass Spectrometry: Improved Metabolite Identification by Retention Time Prediction DJ Creek, A Jankevics, R Breitling, DG Watson, MP Barrett, KEV Burgess Analytical chemistry 83 (22), 8703-8710, 2011	299	2011
GeneRank: Using search engine technology for the analysis of microarray experiments M Julie, B Rainer, H Desmond, G David BMC Bioinformatics 6, 2005	289	2005
A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments F Hong, R Breitling Bioinformatics 24 (3), 374-382, 2008	269	2008
PeakML/mzMatch: a file format, Java library, R library, and tool-chain for mass spectrometry data analysis RA Scheltema, A Jankevics, RC Jansen, MA Swertz, R Breitling Analytical Chemistry-Columbus 83 (7), 2786, 2011	263	2011
System-wide molecular evidence for phenotypic buffering in Arabidopsis J Fu, JJB Keurentjes, H Bouwmeester, T America, FWA Verstappen, ... Nature genetics 41 (2), 166-167, 2009	256	2009
IDEOM: an Excel interface for analysis of LC–MS-based metabolomics data DJ Creek, A Jankevics, KEV Burgess, R Breitling, MP Barrett Bioinformatics 28 (7), 1048-1049, 2012	247	2012
Detecting sequence homology at the gene cluster level with MultiGeneBlast MH Medema, E Takano, R Breitling Molecular biology and evolution 30 (5), 1218-1223, 2013	229	2013
Computational tools for the synthetic design of biochemical pathways MH Medema, R van Raaphorst, E Takano, R Breitling Nature Reviews Microbiology, 2012	220	2012

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