Steven Salzberg
Steven Salzberg
Bloomberg Distinguished Professor, Johns Hopkins University
Verifierad e-postadress på jhu.edu - Startsida
TitelCiteras avÅr
The sequence of the human genome
JC Venter, EW Adams, M.D., Myers, PW Li, RJ Mural, et al.
Science 291 (5507), 1304-1351, 2001
163262001
Fast gapped-read alignment with Bowtie 2
B Langmead, SL Salzberg
Nature methods 9 (4), 357, 2012
158672012
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
B Langmead, C Trapnell, M Pop, SL Salzberg
Genome biology 10 (3), R25, 2009
147902009
TopHat: discovering splice junctions with RNA-Seq
C Trapnell, L Pachter, SL Salzberg
Bioinformatics 25 (9), 1105-1111, 2009
90242009
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.
GI Arabidopsis
Nature 408 (6814), 796, 2000
88482000
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
C Trapnell, BA Williams, G Pertea, A Mortazavi, G Kwan, MJ Van Baren, ...
Nature biotechnology 28 (5), 511, 2010
88112010
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
C Trapnell, A Roberts, L Goff, G Pertea, D Kim, DR Kelley, H Pimentel, ...
Nature protocols 7 (3), 562, 2012
70722012
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
D Kim, G Pertea, C Trapnell, H Pimentel, R Kelley, SL Salzberg
Genome biology 14 (4), R36, 2013
70472013
Genome sequence of the human malaria parasite Plasmodium falciparum
MJ Gardner, N Hall, E Fung, O White, M Berriman, RW Hyman, JM Carlton, ...
Nature 419 (6906), 498, 2002
43562002
FLASH: fast length adjustment of short reads to improve genome assemblies
T Magoč, SL Salzberg
Bioinformatics 27 (21), 2957-2963, 2011
35202011
Versatile and open software for comparing large genomes
S Kurtz, A Phillippy, AL Delcher, M Smoot, M Shumway, C Antonescu, ...
Genome biology 5 (2), R12, 2004
32482004
The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
Science 309 (5740), 1559-1563, 2005
30742005
HISAT: a fast spliced aligner with low memory requirements
D Kim, B Langmead, SL Salzberg
Nature methods 12 (4), 357-360, 2015
26082015
Improved microbial gene identification with GLIMMER
AL Delcher, D Harmon, S Kasif, O White, SL Salzberg
Nucleic acids research 27 (23), 4636-4641, 1999
23221999
Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi
CM Fraser, S Casjens, WM Huang, GG Sutton, R Clayton, R Lathigra, ...
Nature 390 (6660), 580, 1997
21781997
The genome sequence of the malaria mosquito Anopheles gambiae
RA Holt, GM Subramanian, A Halpern, GG Sutton, R Charlab, ...
science 298 (5591), 129-149, 2002
21052002
Identifying bacterial genes and endosymbiont DNA with Glimmer
AL Delcher, KA Bratke, EC Powers, SL Salzberg
Bioinformatics 23 (6), 673-679, 2007
20112007
Evolution of genes and genomes on the Drosophila phylogeny
Drosophila 12 Genomes Consortium
Nature 450 (7167), 203, 2007
17772007
DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae
JF Heidelberg, JA Eisen, WC Nelson, RA Clayton, ML Gwinn, RJ Dodson, ...
Nature 406 (6795), 477, 2000
17502000
Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima
KE Nelson, RA Clayton, SR Gill, ML Gwinn, RJ Dodson, DH Haft, ...
Nature 399 (6734), 323, 1999
16331999
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Artiklar 1–20