| Improved automatic detection and segmentation of cell nuclei in histopathology images Y Al-Kofahi, W Lassoued, W Lee, B Roysam IEEE Transactions on Biomedical Engineering 57 (4), 841-852, 2009 | 843 | 2009 |
| Effects of insertion conditions on tissue strain and vascular damage during neuroprosthetic device insertion CS Bjornsson, SJ Oh, YA Al-Kofahi, YJ Lim, KL Smith, JN Turner, S De, ... Journal of neural engineering 3 (3), 196, 2006 | 382 | 2006 |
| A deep learning-based algorithm for 2-D cell segmentation in microscopy images Y Al-Kofahi, A Zaltsman, R Graves, W Marshall, M Rusu BMC bioinformatics 19, 1-11, 2018 | 216 | 2018 |
| Associative image analysis: a method for automated quantification of 3D multi-parameter images of brain tissue CS Bjornsson, G Lin, Y Al-Kofahi, A Narayanaswamy, KL Smith, W Shain, ... Journal of neuroscience methods 170 (1), 165-178, 2008 | 135 | 2008 |
| Optimized multiplex immunofluorescence single-cell analysis reveals tuft cell heterogeneity ET McKinley, Y Sui, Y Al-Kofahi, BA Millis, MJ Tyska, JT Roland, ... JCI insight 2 (11), 2017 | 132 | 2017 |
| Improved detection of branching points in algorithms for automated neuron tracing from 3D confocal images Y Al‐Kofahi, N Dowell‐Mesfin, C Pace, W Shain, JN Turner, B Roysam Cytometry Part A: The Journal of the International Society for Analytical …, 2008 | 64 | 2008 |
| Laser scanning cytometry and its applications: a pioneering technology in the field of quantitative imaging cytometry M Henriksen, B Miller, J Newmark, Y Al-Kofahi, E Holden Methods in cell biology 102, 159-205, 2011 | 52 | 2011 |
| Cell‐based quantification of molecular biomarkers in histopathology specimens Y Al‐Kofahi, W Lassoued, K Grama, SK Nath, J Zhu, R Oueslati, ... Histopathology 59 (1), 40-54, 2011 | 51 | 2011 |
| Stromal-based signatures for the classification of gastric cancer MT Uhlik, J Liu, BL Falcon, S Iyer, J Stewart, H Celikkaya, M O'Mahony, ... Cancer Research 76 (9), 2573-2586, 2016 | 39 | 2016 |
| Multiscale, multimodal analysis of tumor heterogeneity in IDH1 mutant vs wild-type diffuse gliomas ME Berens, A Sood, JS Barnholtz-Sloan, JF Graf, S Cho, S Kim, J Kiefer, ... PLoS One 14 (12), e0219724, 2019 | 33 | 2019 |
| Modulation of cultured neural networks using neurotrophin release from hydrogel-coated microelectrode arrays SB Jun, MR Hynd, NM Dowell-Mesfin, Y Al-Kofahi, B Roysam, W Shain, ... Journal of neural engineering 5 (2), 203, 2008 | 32 | 2008 |
| Pointwise mutual information quantifies intratumor heterogeneity in tissue sections labeled with multiple fluorescent biomarkers DM Spagnolo, R Gyanchandani, Y Al-Kofahi, AM Stern, TR Lezon, ... Journal of pathology informatics 7 (1), 47, 2016 | 28 | 2016 |
| Comparison of multiplexed immunofluorescence imaging to chromogenic immunohistochemistry of skin biomarkers in response to monkeypox virus infection A Sood, Y Sui, E McDonough, A Santamaría-Pang, Y Al-Kofahi, Z Pang, ... Viruses 12 (8), 787, 2020 | 27 | 2020 |
| Platform for quantitative evaluation of spatial intratumoral heterogeneity in multiplexed fluorescence images DM Spagnolo, Y Al-Kofahi, P Zhu, TR Lezon, A Gough, AM Stern, AV Lee, ... Cancer research 77 (21), e71-e74, 2017 | 26 | 2017 |
| Modular image analysis system and method Y Al-Kofahi, BD Sarachan US Patent 9,858,469, 2018 | 19 | 2018 |
| Method and systems for cell-level fish dot counting DR Padfield, AE Seppo, YA Al-Kofahi US Patent 9,042,631, 2015 | 14 | 2015 |
| System and method for single channel whole cell segmentation Y Al-Kofahi, M Rusu US Patent 10,789,451, 2020 | 12 | 2020 |
| Automated cell segmentation quality control RK Padmanabhan, EJ Moler, Y Al-Kofahi, A Santamaria-Pang, ... US Patent 10,083,340, 2018 | 11 | 2018 |
| The FARSIGHT project: associative 4D/5D image analysis methods for quantifying complex and dynamic biological microenvironments B Roysam, W Shain, E Robey, Y Chen, A Narayanaswamy, CL Tsai, ... Microscopy and Microanalysis 14 (S2), 60-61, 2008 | 10 | 2008 |
| Axial compensation in an inner geared pump for a closed circuit F Arbogast, G Nagel US Patent 6,659,748, 2003 | 10* | 2003 |
Badrinath Roysam, FIEEE, FAIMBEECE Department, University of HoustonVerifierad e-postadress på uh.edu
