James A Gagnon
James A Gagnon
Assistant Professor - University of Utah
Verified email at utah.edu - Homepage
Title
Cited by
Cited by
Year
CHOPCHOP: a CRISPR/Cas9 and TALEN web tool for genome editing
TG Montague, JM Cruz, JA Gagnon, GM Church, E Valen
Nucleic acids research 42 (W1), W401-W407, 2014
7882014
Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of single-guide RNAs
JA Gagnon, E Valen, SB Thyme, P Huang, L Ahkmetova, A Pauli, ...
PLoS One 9 (5), e98186, 2014
6572014
CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering
K Labun, TG Montague, JA Gagnon, SB Thyme, E Valen
Nucleic acids research 44 (W1), W272-W276, 2016
5942016
Whole organism lineage tracing by combinatorial and cumulative genome editing
A McKenna, G Findlay, JA Gagnon, M Horwitz, AF Schier, J Shendure
Science 353 (6298), aaf7907, 2016
4352016
Toddler: an embryonic signal that promotes cell movement via Apelin receptors
A Pauli, ML Norris, E Valen, GL Chew, JA Gagnon, S Zimmerman, ...
Science 343 (6172), 2014
4032014
Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain
B Raj, DE Wagner, A McKenna, S Pandey, AM Klein, J Shendure, ...
Nature biotechnology 36 (5), 442-450, 2018
2902018
Osteoblast differentiation and skeletal development are regulated by Mdm2–p53 signaling
CJ Lengner, HA Steinman, J Gagnon, TW Smith, JE Henderson, ...
The Journal of cell biology 172 (6), 909-921, 2006
2582006
Efficient CRISPR-Cas9-mediated generation of knockin human pluripotent stem cells lacking undesired mutations at the targeted locus
FT Merkle, WM Neuhausser, D Santos, E Valen, JA Gagnon, K Maas, ...
Cell reports 11 (6), 875-883, 2015
1372015
Multiple Kinesin Motors Coordinate Cytoplasmic RNA Transport on a Subpopulation of Microtubules in Xenopus Oocytes
TJ Messitt, JA Gagnon, JA Kreiling, CA Pratt, YJ Yoon, KL Mowry
Developmental cell 15 (3), 426-436, 2008
1082008
Molecular motors: directing traffic during RNA localization
JA Gagnon, KL Mowry
Critical reviews in biochemistry and molecular biology 46 (3), 229-239, 2011
752011
PTB/hnRNP I is required for RNP remodeling during RNA localization in Xenopus oocytes
RA Lewis, JA Gagnon, KL Mowry
Molecular and cellular biology 28 (2), 678-686, 2008
572008
Recording development with single cell dynamic lineage tracing
A McKenna, JA Gagnon
Development 146 (12), 2019
552019
Expansion microscopy of zebrafish for neuroscience and developmental biology studies
L Freifeld, I Odstrcil, D Förster, A Ramirez, JA Gagnon, O Randlett, ...
Proceedings of the National Academy of Sciences 114 (50), E10799-E10808, 2017
492017
Evolutionarily conserved regulation of hypocretin neuron specification by Lhx9
J Liu, FT Merkle, AV Gandhi, JA Gagnon, IG Woods, CN Chiu, ...
Development 142 (6), 1113-1124, 2015
442015
Directional transport is mediated by a Dynein-dependent step in an RNA localization pathway
JA Gagnon, JA Kreiling, EA Powrie, TR Wood, KL Mowry
PLoS Biology 11 (4), e1001551, 2013
372013
Nodal patterning without lefty inhibitory feedback is functional but fragile
KW Rogers, ND Lord, JA Gagnon, A Pauli, S Zimmerman, DC Aksel, ...
Elife 6, e28785, 2017
342017
Large-scale reconstruction of cell lineages using single-cell readout of transcriptomes and CRISPR–Cas9 barcodes by scGESTALT
B Raj, JA Gagnon, AF Schier
Nature protocols 13 (11), 2685-2713, 2018
302018
Accurate analysis of genuine CRISPR editing events with ampliCan
K Labun, X Guo, A Chavez, G Church, JA Gagnon, E Valen
Genome research 29 (5), 843-847, 2019
252019
Zebrafish oxytocin neurons drive nocifensive behavior via brainstem premotor targets
CL Wee, M Nikitchenko, WC Wang, SJ Luks-Morgan, E Song, JA Gagnon, ...
Nature neuroscience 22 (9), 1477-1492, 2019
242019
The primary role of zebrafish nanog is in extra-embryonic tissue
JA Gagnon, K Obbad, AF Schier
Development 145 (1), dev147793, 2018
21*2018
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Articles 1–20