| MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020 | 337 | 2020 |
| The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes SMD Seaver, F Liu, Q Zhang, J Jeffryes, JP Faria, JN Edirisinghe, ... Nucleic acids research 49 (D1), D575-D588, 2021 | 163 | 2021 |
| Discovery and implementation of a novel pathway for n-butanol production via 2-oxoglutarate S Ferreira, R Pereira, F Liu, P Vilaça, I Rocha Biotechnology for biofuels 12, 1-14, 2019 | 16 | 2019 |
| Development and application of efficient pathway enumeration algorithms for metabolic engineering applications F Liu, P Vilaça, I Rocha, M Rocha Computer methods and programs in biomedicine 118 (2), 134-146, 2015 | 13 | 2015 |
| TranSyT, an innovative framework for identifying transport systems D Lagoa, JP Faria, F Liu, E Cunha, CS Henry, O Dias biorxiv, 2021.04. 29.441738, 2021 | 10 | 2021 |
| A model integration pipeline for the improvement of human genome-scale metabolic reconstructions V Vieira, J Ferreira, R Rodrigues, F Liu, M Rocha Journal of integrative bioinformatics 16 (1), 20180068, 2019 | 7 | 2019 |
| Chemical-damage MINE: A database of curated and predicted spontaneous metabolic reactions JG Jeffryes, C Lerma-Ortiz, F Liu, A Golubev, TD Niehaus, ... Metabolic Engineering 69, 302-312, 2022 | 6 | 2022 |
| A KBase case study on genome-wide transcriptomics and plant primary metabolism in response to drought stress in Sorghum. S Kumari, V Kumar, K Beilsmith, SMD Seaver, S Canon, P Dehal, T Gu, ... Current plant biology 28, 100229, 2021 | 6 | 2021 |
| ModelSEED v2: High-throughput genome-scale metabolic model reconstruction with enhanced energy biosynthesis pathway prediction JP Faria, F Liu, JN Edirisinghe, N Gupta, SMD Seaver, AP Freiburger, ... bioRxiv, 2023.10. 04.556561, 2023 | 3 | 2023 |
| Evaluation and development of algorithms and computational tools for metabolic pathway optimization FAW Liu PQDT-Global, 2018 | 2 | 2018 |
| A functional microbiome catalog crowdsourced from North American rivers MA Borton, BB McGivern, KR Willi, BJ Woodcroft, AC Mosier, ... bioRxiv, 2023.07. 22.550117, 2023 | 1 | 2023 |
| MIYeastK: The Metabolic Integrated Yeast Knowledgebase S Santos, F Liu, C Costa, P Vilaça, M Rocha, I Rocha | 1 | 2016 |
| Elgokhy, sherin m. 31 estévez, carlos 9 fdez-riverola, florentino 49, 269 ferreira, joao 253 J Ferrnandes, JP Arrais, NF Azevedo, E Balsa-Canto, JR Banga, ... 8th International Conference on Practical Applications of Computational …, 2014 | 1 | 2014 |
| A Functional Microbiome Catalog Crowdsourced from North American Rivers J Stegen, M Borton, BB McGivern, K Willi, BJ Woodcroft, DM Singleton, ... AGU23, 2023 | | 2023 |
| TranSyT, an innovative framework for identifying transport systems E Cunha, D Lagoa, JP Faria, F Liu, CS Henry, O Dias Bioinformatics 39 (8), btad466, 2023 | | 2023 |
| GROWdb US River Systems-Samples M Borton, K Wrighton, B Sadkhin, C Henry, E Wood-Charlson, F Liu, ... Colorado State University, Fort Collins, CO, 2022 | | 2022 |
| Revising lipid chemical structures in genome-wide metabolic models with BOIMMG JMCA Ribeiro, F Liu, O Dias | | 2021 |
| Method for n-butanol production using heterologous expression of anaerobic pathways ICDAP Da, ASA FERREIRA, FAW LIU, RMPDAS PEREIRA, PRC VILAÇA, ... US Patent App. 17/042,124, 2021 | | 2021 |
| Multi-omics Integration for Substrate-Explicit Biogeochemical Modeling and More HS Song, WC Nelson, JY Lee, C Henry, J Edirisinghe, F Liu, J Stegen, ... AGU Fall Meeting Abstracts 2019, B43C-04, 2019 | | 2019 |
| Method for n-butanol production using heterologous expression of anaerobic pathways I Rocha, M Rocha, S Ferreira, FAW Liu, R Pereira, P Vilaça, S Soares | | 2019 |
Christopher HenryComputational Biologist, Argonne National LaboratoryVerified email at mcs.anl.gov
