Josh Francis
Josh Francis
Gritstone Oncology
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Cited by
Cited by
Sequence analysis of mutations and translocations across breast cancer subtypes
S Banerji, K Cibulskis, C Rangel-Escareno, KK Brown, SL Carter, ...
Nature 486 (7403), 405-409, 2012
Prospective derivation of a living organoid biobank of colorectal cancer patients
M van de Wetering, HE Francies, JM Francis, G Bounova, F Iorio, A Pronk, ...
Cell 161 (4), 933-945, 2015
Chromothripsis from DNA damage in micronuclei
CZ Zhang, A Spektor, H Cornils, JM Francis, EK Jackson, S Liu, ...
Nature 522 (7555), 179-184, 2015
Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma
I Tirosh, AS Venteicher, C Hebert, LE Escalante, AP Patel, K Yizhak, ...
Nature 539 (7628), 309-313, 2016
Whole-exome sequencing of circulating tumor cells provides a window into metastatic prostate cancer
JG Lohr, VA Adalsteinsson, K Cibulskis, AD Choudhury, M Rosenberg, ...
Nature biotechnology 32 (5), 479, 2014
Scalable whole-exome sequencing of cell-free DNA reveals high concordance with metastatic tumors
VA Adalsteinsson, G Ha, SS Freeman, AD Choudhury, DG Stover, ...
Nature communications 8 (1), 1-13, 2017
Somatic mutation of CDKN1B in small intestine neuroendocrine tumors
JM Francis, A Kiezun, AH Ramos, S Serra, CS Pedamallu, ZR Qian, ...
Nature genetics 45 (12), 1483-1486, 2013
EGFR variant heterogeneity in glioblastoma resolved through single-nucleus sequencing
JM Francis, CZ Zhang, CL Maire, J Jung, VE Manzo, VA Adalsteinsson, ...
Cancer discovery 4 (8), 956-971, 2014
Identification of focally amplified lineage-specific super-enhancers in human epithelial cancers
X Zhang, PS Choi, JM Francis, M Imielinski, H Watanabe, AD Cherniack, ...
Nature genetics 48 (2), 176-182, 2016
Covalent histone modifications underlie the developmental regulation of insulin gene transcription in pancreatic β cells
SK Chakrabarti, J Francis, SM Ziesmann, JC Garmey, RG Mirmira
Journal of Biological Chemistry 278 (26), 23617-23623, 2003
Mechanism of insulin gene regulation by the pancreatic transcription factor Pdx-1: application of pre-mRNA analysis and chromatin immunoprecipitation to assess formation of …
T Iype, J Francis, JC Garmey, JC Schisler, R Nesher, GC Weir, TC Becker, ...
Journal of Biological Chemistry 280 (17), 16798-16807, 2005
Loss of the retinoblastoma binding protein 2 (RBP2) histone demethylase suppresses tumorigenesis in mice lacking Rb1 or Men1
W Lin, J Cao, J Liu, ML Beshiri, Y Fujiwara, J Francis, AD Cherniack, ...
Proceedings of the National Academy of Sciences 108 (33), 13379-13386, 2011
The tumor suppressor Cdc73 functionally associates with CPSF and CstF 3′ mRNA processing factors
O Rozenblatt-Rosen, T Nagaike, JM Francis, S Kaneko, KA Glatt, ...
Proceedings of the National Academy of Sciences 106 (3), 755-760, 2009
Prognostic impact of novel molecular subtypes of small intestinal neuroendocrine tumor
A Karpathakis, H Dibra, C Pipinikas, A Feber, T Morris, J Francis, D Oukrif, ...
Clinical Cancer Research 22 (1), 250-258, 2016
SOX2 and p63 colocalize at genetic loci in squamous cell carcinomas
H Watanabe, Q Ma, S Peng, G Adelmant, D Swain, W Song, C Fox, ...
The Journal of clinical investigation 124 (4), 1636-1645, 2014
Pdx-1 links histone H3-Lys-4 methylation to RNA polymerase II elongation during activation of insulin transcription
J Francis, SK Chakrabarti, JC Garmey, RG Mirmira
Journal of Biological Chemistry 280 (43), 36244-36253, 2005
Deep learning using tumor HLA peptide mass spectrometry datasets improves neoantigen identification
B Bulik-Sullivan, J Busby, CD Palmer, MJ Davis, T Murphy, A Clark, ...
Nature biotechnology 37 (1), 55-63, 2019
Cetuximab response of lung cancer–derived EGF receptor mutants is associated with asymmetric dimerization
J Cho, L Chen, N Sangji, T Okabe, K Yonesaka, JM Francis, RJ Flavin, ...
Cancer research 73 (22), 6770-6779, 2013
Somatic superenhancer duplications and hotspot mutations lead to oncogenic activation of the KLF5 transcription factor
X Zhang, PS Choi, JM Francis, GF Gao, JD Campbell, A Ramachandran, ...
Cancer discovery 8 (1), 108-125, 2018
Calibrating genomic and allelic coverage bias in single-cell sequencing
CZ Zhang, VA Adalsteinsson, J Francis, H Cornils, J Jung, C Maire, ...
Nature communications 6 (1), 1-10, 2015
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