Ludovic Gillet
Ludovic Gillet
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Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis
LC Gillet, P Navarro, S Tate, H Röst, N Selevsek, L Reiter, R Bonner, ...
Molecular & Cellular Proteomics 11 (6), 2012
Molecular mechanisms of mammalian global genome nucleotide excision repair
LCJ Gillet, OD Schärer
Chemical reviews 106 (2), 253-276, 2006
OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data
HL Röst, G Rosenberger, P Navarro, L Gillet, SM Miladinović, ...
Nature biotechnology 32 (3), 219-223, 2014
Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system
BC Collins, LC Gillet, G Rosenberger, HL Röst, A Vichalkovski, ...
Nature methods 10 (12), 1246-1253, 2013
Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps
T Guo, P Kouvonen, CC Koh, LC Gillet, WE Wolski, HL Röst, ...
Nature medicine 21 (4), 407-413, 2015
Quantitative variability of 342 plasma proteins in a human twin population
Y Liu, A Buil, BC Collins, LCJ Gillet, LC Blum, LY Cheng, O Vitek, ...
Molecular systems biology 11 (2), 786, 2015
Building high-quality assay libraries for targeted analysis of SWATH MS data
OT Schubert, LC Gillet, BC Collins, P Navarro, G Rosenberger, WE Wolski, ...
Nature protocols 10 (3), 426-441, 2015
Mass spectrometry applied to bottom-up proteomics: entering the high-throughput era for hypothesis testing
LC Gillet, A Leitner, R Aebersold
Annual review of analytical chemistry 9, 449-472, 2016
Quantitative measurements of N‐linked glycoproteins in human plasma by SWATH‐MS
Y Liu, R Hüttenhain, S Surinova, LCJ Gillet, J Mouritsen, R Brunner, ...
Proteomics 13 (8), 1247-1256, 2013
Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial
C Ludwig, L Gillet, G Rosenberger, S Amon, BC Collins, R Aebersold
Molecular systems biology 14 (8), e8126, 2018
Glycoproteomic analysis of prostate cancer tissues by SWATH mass spectrometry discovers N-acylethanolamine acid amidase and protein tyrosine kinase 7 as signatures for tumor …
Y Liu, J Chen, A Sethi, QK Li, L Chen, B Collins, LCJ Gillet, B Wollscheid, ...
Molecular & Cellular Proteomics 13 (7), 1753-1768, 2014
A multicenter study benchmarks software tools for label-free proteome quantification
P Navarro, J Kuharev, LC Gillet, OM Bernhardt, B MacLean, HL Röst, ...
Nature biotechnology 34 (11), 1130-1136, 2016
Absolute proteome composition and dynamics during dormancy and resuscitation of Mycobacterium tuberculosis
OT Schubert, C Ludwig, M Kogadeeva, M Zimmermann, G Rosenberger, ...
Cell host & microbe 18 (1), 96-108, 2015
Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry
N Selevsek, CY Chang, LC Gillet, P Navarro, OM Bernhardt, L Reiter, ...
Molecular & Cellular Proteomics 14 (3), 739-749, 2015
TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics
HL Röst, Y Liu, G D'Agostino, M Zanella, P Navarro, G Rosenberger, ...
Nature methods 13 (9), 777-783, 2016
Preparation of C8-amine and acetylamine adducts of 2 ‘-deoxyguanosine suitably protected for DNA synthesis
LCJ Gillet, OD Schärer
Organic letters 4 (24), 4205-4208, 2002
An open-source computational and data resource to analyze digital maps of immunopeptidomes
E Caron, L Espona, DJ Kowalewski, H Schuster, N Ternette, A Alpizar, ...
Elife 4, e07661, 2015
Site-specific incorporation of N-(deoxyguanosin-8-yl)-2-acetylaminofluorene (dG-AAF) into oligonucleotides using modified ‘ultra-mild’DNA synthesis
LCJ Gillet, J Alzeer, OD Schärer
Nucleic acids research 33 (6), 1961-1969, 2005
Conserved peptide fragmentation as a benchmarking tool for mass spectrometers and a discriminating feature for targeted proteomics
UH Toprak, LC Gillet, A Maiolica, P Navarro, A Leitner, R Aebersold
Molecular & Cellular Proteomics 13 (8), 2056-2071, 2014
Crosslinking of the NER damage recognition proteins XPC-HR23B, XPA and RPA to photoreactive probes that mimic DNA damages
EA Maltseva, NI Rechkunova, LC Gillet, IO Petruseva, OD Schärer, ...
Biochimica et Biophysica Acta (BBA)-General Subjects 1770 (5), 781-789, 2007
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