Anna Kreshuk
Anna Kreshuk
Group Leader, EMBL Heidelberg
Verified email at embl.de
Title
Cited by
Cited by
Year
ROOT—A C++ framework for petabyte data storage, statistical analysis and visualization
I Antcheva, M Ballintijn, B Bellenot, M Biskup, R Brun, N Buncic, P Canal, ...
Computer Physics Communications 180 (12), 2499-2512, 2009
6772009
Automated detection and segmentation of synaptic contacts in nearly isotropic serial electron microscopy images
A Kreshuk, CN Straehle, C Sommer, U Koethe, M Cantoni, G Knott, ...
PloS one 6 (10), e24899, 2011
1332011
ROOT—A C++ framework for petabyte data storage, statistical analysis and visualization
I Antcheva, M Ballintijn, B Bellenot, M Biskup, R Brun, N Buncic, P Canal, ...
Computer Physics Communications 182 (6), 1384-1385, 2011
1092011
ilastik: interactive machine learning for (bio) image analysis
S Berg, D Kutra, T Kroeger, CN Straehle, BX Kausler, C Haubold, ...
Nature Methods, 1-7, 2019
982019
Multicut brings automated neurite segmentation closer to human performance
T Beier, C Pape, N Rahaman, T Prange, S Berg, DD Bock, A Cardona, ...
Nature Methods 14 (2), 2017
832017
Three‐dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues
C Calě, J Baghabra, DJ Boges, GR Holst, A Kreshuk, FA Hamprecht, ...
Journal of Comparative Neurology 524 (1), 23-38, 2016
722016
Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons
B Maco, A Holtmaat, M Cantoni, A Kreshuk, CN Straehle, FA Hamprecht, ...
PloS one 8 (2), e57405, 2013
672013
Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks
A Kreshuk, U Koethe, E Pax, DD Bock, FA Hamprecht
PLoS ONE, e87351, 2014
552014
Semiautomated correlative 3D electron microscopy of in vivo–imaged axons and dendrites
B Maco, M Cantoni, A Holtmaat, A Kreshuk, FA Hamprecht, GW Knott
nature protocols 9 (6), 1354, 2014
382014
Segmenting and Tracking Multiple Dividing Targets Using ilastik
C Haubold, M Schiegg, A Kreshuk, S Berg, U Koethe, FA Hamprecht
Focus on Bio-Image Informatics, 199-229, 2016
312016
Automated segmentation of synapses in 3D EM data
A Kreshuk, CN Straehle, C Sommer, U Koethe, G Knott, FA Hamprecht
Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on …, 2011
312011
The Mutex Watershed: Efficient, Parameter-Free Image Partitioning
S Wolf, C Pape, A Bailoni, N Rahaman, A Kreshuk, U Köthe, ...
Proceedings of the European Conference on Computer Vision (ECCV), 546-562, 2018
252018
Automated detection and analysis of bimodal isotope peak distributions in H/D exchange mass spectrometry using HEXICON
A Kreshuk, M Stankiewicz, X Lou, M Kirchner, FA Hamprecht, MP Mayer
International Journal of Mass Spectrometry 302 (1), 125-131, 2011
252011
Automated tracing of myelinated axons and detection of the nodes of Ranvier in serial images of peripheral nerves
A Kreshuk, R Walecki, U Koethe, M Gierthmuehlen, D Plachta, C Genoud, ...
Journal of Microscopy, 2015
172015
Solving Large Multicut Problems for Connectomics via Domain Decomposition
C Pape, T Beier, P Li, V Jain, DD Bock, A Kreshuk
Proceedings of the IEEE Conference on Computer Vision and Pattern …, 2017
152017
Who Is Talking to Whom: Synaptic Partner Detection in Anisotropic Volumes of Insect Brain
A Kreshuk, J Funke, A Cardona, FA Hamprecht
Medical Image Computing and Computer-Assisted Intervention–MICCAI 2015, 661-668, 2015
152015
Neuron segmentation with high-level biological priors
NE Krasowski, T Beier, GW Knott, U Köthe, FA Hamprecht, A Kreshuk
IEEE transactions on medical imaging 37 (4), 829-839, 2018
132018
Improving 3D EM Data Segmentation by Joint Optimization over Boundary Evidence and Biological Priors
N Krasowski, T Beier, GW Knott, U Koethe, FA Hamprecht, A Kreshuk
IEEE ISBI: From Nano to Macro, 2015
132015
Profiling cellular diversity in sponges informs animal cell type and nervous system evolution
JM Musser, KJ Schippers, M Nickel, G Mizzon, AB Kohn, C Pape, ...
bioRxiv, 758276, 2019
102019
Accurate and Versatile 3D Segmentation of Plant Tissues at Cellular Resolution
A Wolny, L Cerrone, A Vijayan, R Tofanelli, AV Barro, M Louveaux, ...
bioRxiv, 2020
82020
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