| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57-74, 2012 | 13823 | 2012 |
| A map of human genome variation from population-scale sequencing 1000 Genomes Project Consortium Nature 467 (7319), 1061-1073, 2010 | 8736 | 2010 |
| Architecture of the human regulatory network derived from ENCODE data MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ... Nature 489 (7414), 91-100, 2012 | 1640 | 2012 |
| Mapping copy number variation by population-scale genome sequencing RE Mills, K Walter, C Stewart, RE Handsaker, K Chen, C Alkan, A Abyzov, ... Nature 470 (7332), 59-65, 2011 | 1272 | 2011 |
| Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ... Science 330 (6012), 1775-1787, 2010 | 1095 | 2010 |
| Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ... Nature methods 10 (12), 1177-1184, 2013 | 765 | 2013 |
| AlleleSeq: analysis of allele‐specific expression and binding in a network framework J Rozowsky, A Abyzov, J Wang, P Alves, D Raha, A Harmanci, J Leng, ... Molecular systems biology 7 (1), 522, 2011 | 393 | 2011 |
| Comparative analysis of the transcriptome across distant species MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ... Nature 512 (7515), 445-448, 2014 | 327 | 2014 |
| Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors KY Yip, C Cheng, N Bhardwaj, JB Brown, J Leng, A Kundaje, J Rozowsky, ... Genome biology 13 (9), R48, 2012 | 296 | 2012 |
| Evolutionary changes in promoter and enhancer activity during human corticogenesis SK Reilly, J Yin, AE Ayoub, D Emera, J Leng, J Cotney, R Sarro, P Rakic, ... Science 347 (6226), 1155-1159, 2015 | 280 | 2015 |
| The Evolution of Lineage-Specific Regulatory Activities in the Human Embryonic Limb J Cotney, J Leng, J Yin, SK Reilly, LE DeMare, D Emera, AE Ayoub, ... Cell 154 (1), 185-196, 2013 | 246 | 2013 |
| Understanding transcriptional regulation by integrative analysis of transcription factor binding data C Cheng, R Alexander, R Min, J Leng, KY Yip, J Rozowsky, KK Yan, ... Genome research 22 (9), 1658-1667, 2012 | 198 | 2012 |
| Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb J Cotney, J Leng, S Oh, LE DeMare, SK Reilly, MB Gerstein, JP Noonan Genome research 22 (6), 1069-1080, 2012 | 156 | 2012 |
| The genomic landscape of cohesin-associated chromatin interactions LE DeMare, J Leng, J Cotney, SK Reilly, J Yin, R Sarro, JP Noonan Genome research 23 (8), 1224-1234, 2013 | 149 | 2013 |
| Transcriptional programs in transient embryonic zones of the cerebral cortex defined by high-resolution mRNA sequencing AE Ayoub, S Oh, Y Xie, J Leng, J Cotney, MH Dominguez, JP Noonan, ... Proceedings of the National Academy of Sciences 108 (36), 14950-14955, 2011 | 147 | 2011 |
| Comparative analysis of pseudogenes across three phyla C Sisu, B Pei, J Leng, A Frankish, Y Zhang, S Balasubramanian, R Harte, ... Proceedings of the National Academy of Sciences 111 (37), 13361-13366, 2014 | 81 | 2014 |
| RNA-Seq Profiling of Spinal Cord Motor Neurons from a Presymptomatic SOD1 ALS Mouse U Bandyopadhyay, J Cotney, M Nagy, S Oh, J Leng, M Mahajan, S Mane, ... PloS one 8 (1), e53575, 2013 | 76 | 2013 |
| IQSeq: Integrated Isoform Quantification Analysis Based on Next-Generation Sequencing J Du, J Leng, L Habegger, A Sboner, D McDermott, M Gerstein PloS one 7 (1), e29175, 2012 | 10 | 2012 |
| Genome-wide analysis of the binding sites of more than 100 transcription-related factors defines different types of genomic regions with distinct biological properties KY Yip, C Cheng, N Bhardwaj, JB Brown, J Leng, A Kundaje, J Rozowsky, ... Genome Res, 2012 | 2 | 2012 |
| Studying the Evolution of Gene Regulation Using Next-Generation Sequencing: Computational Methods and Data Integration J Leng Yale University, 2014 | | 2014 |
Mark GersteinProfessor of Biomedical Informatics, Yale UniversityVerified email at yale.edu
