Tomasz Zok

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Citations	1701	1348
h-index	19	17
i10-index	29	25

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Marta SzachniukProfessor; Institute of Bioorganic Chemistry PAS and Poznan University of TechnologyVerified email at cs.put.poznan.pl
Maciej AntczakAssociate Professor at Institute of Computing Science, Poznan University of TechnologyVerified email at cs.put.poznan.pl
Mariusz PopendaDr chemii, PANVerified email at ibch.poznan.pl
Jacek BlazewiczProfesor informatyki, Politechnika PoznanskaVerified email at cs.put.poznan.pl
Michał ŻurkowskiPoznań University of TechnologyVerified email at put.poznan.pl
Piotr LukasiakAssociate Professor, Institute of Computing Science, Poznan University of TechnologyVerified email at put.poznan.pl
Jakub WiedemannPoznan University of TechnologyVerified email at cs.put.poznan.pl
Janusz BujnickiProfessor of Biology, International Institute of Molecular and Cell Biology in WarsawVerified email at iimcb.gov.pl
Eric WesthofArchitecture et Réactivité de l'ARN Université de Strasbourg Institut de biologieVerified email at unistra.fr
Zhichao (Chichau) MiaoGuangzhou Laboratory, Guangzhou Medical UniversityVerified email at gzlab.ac.cn
Agnieszka RybarczykPoznan University of Technology; Gdynia Maritime UniversityVerified email at cs.put.poznan.pl
Tomasz RatajczakAssistant at Institute of Computing Science, Poznan University of TechnologyVerified email at cs.put.poznan.pl
Joanna MiskiewiczPhD student, Poznan University of TechnologyVerified email at cs.put.poznan.pl
Maciej MiłostanPoznan University of Technology, Institute of Computing ScienceVerified email at cs.put.poznan.pl
Marcin MagnusComputational RNA biologist at Molecular and Cell Biology, Harvard UniversityVerified email at fas.harvard.edu
Marcos López-Caniego (ORCID: 0000...Aurora Technology for the European Space Agency. European Space Astronomy Centre. Madrid. SpainVerified email at ext.esa.int
Kacper FigurskiUniwersytet im. Adama Mickiewicza w PoznaniuVerified email at st.amu.edu.pl
Pritha GhoshSenior Clinical Scientist, ConcertAIVerified email at concertai.com
Shi-Jie ChenUniversity of Missouri-ColumbiaVerified email at missouri.edu
Natalia SzóstakInstitute of Bioorganic Chemistry Polish Academy of SciencesVerified email at ibch.poznan.pl

Tomasz Zok

Poznan University of Technology

Verified email at cs.put.poznan.pl - Homepage

Computer Science Bioinformatics


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New functionality of RNAComposer: an application to shape the axis of miR160 precursor structure M Antczak, M Popenda, T Zok, J Sarzynska, T Ratajczak, K Tomczyk, ... Acta Biochimica Polonica 63 (4), 737-744, 2016	205	2016
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ... Rna 23 (5), 655-672, 2017	195	2017
RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ... Rna 21 (6), 1066-1084, 2015	191	2015
RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers Z Miao, RW Adamiak, M Antczak, MJ Boniecki, J Bujnicki, SJ Chen, ... Rna 26 (8), 982-995, 2020	127	2020
RNApdbee 2.0: multifunctional tool for RNA structure annotation T Zok, M Antczak, M Zurkowski, M Popenda, J Blazewicz, RW Adamiak, ... Nucleic acids research 46 (W1), W30-W35, 2018	117	2018
The European Integrated Tokamak Modelling (ITM) effort: achievements and first physics results GL Falchetto, D Coster, R Coelho, BD Scott, L Figini, D Kalupin, E Nardon, ... Nuclear Fusion 54 (4), 043018, 2014	108	2014
RNApdbee—a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs M Antczak, T Zok, M Popenda, P Lukasiak, RW Adamiak, J Blazewicz, ... Nucleic acids research 42 (W1), W368-W372, 2014	85	2014
RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools M Magnus, M Antczak, T Zok, J Wiedemann, P Lukasiak, Y Cao, ... Nucleic acids research 48 (2), 576-588, 2020	74	2020
INDIGO-DataCloud: A platform to facilitate seamless access to e-infrastructures D Salomoni, I Campos, L Gaido, JM de Lucas, P Solagna, J Gomes, ... Journal of Grid Computing 16, 381-408, 2018	68	2018
When will RNA get its AlphaFold moment? B Schneider, BA Sweeney, A Bateman, J Cerny, T Zok, M Szachniuk Nucleic Acids Research 51 (18), 9522-9532, 2023	54	2023
New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation M Antczak, M Popenda, T Zok, M Zurkowski, RW Adamiak, M Szachniuk Bioinformatics 34 (8), 1304-1312, 2018	47	2018
MCQ4Structures to compute similarity of molecule structures T Zok, M Popenda, M Szachniuk Central European Journal of Operations Research 22, 457-473, 2014	41	2014
New in silico approach to assessing RNA secondary structures with non-canonical base pairs A Rybarczyk, N Szostak, M Antczak, T Zok, M Popenda, R Adamiak, ... BMC bioinformatics 16, 1-12, 2015	38	2015
New prediction categories in CASP15 A Kryshtafovych, M Antczak, M Szachniuk, T Zok, RC Kretsch, R Rangan, ... Proteins: Structure, Function, and Bioinformatics 91 (12), 1550-1557, 2023	32	2023
Topology-based classification of tetrads and quadruplex structures M Popenda, J Miskiewicz, J Sarzynska, T Zok, M Szachniuk Bioinformatics 36 (4), 1129-1134, 2020	28	2020
ONQUADRO: a database of experimentally determined quadruplex structures T Zok, N Kraszewska, J Miskiewicz, P Pielacinska, M Zurkowski, ... Nucleic Acids Research 50 (D1), D253-D258, 2022	26	2022
Approaches to distributed execution of scientific workflows in kepler M Płóciennik, T Żok, I Altintas, J Wang, D Crawl, D Abramson, F Imbeaux, ... Fundamenta Informaticae 128 (3), 281-302, 2013	21	2013
Entanglements of structure elements revealed in RNA 3D models M Popenda, T Zok, J Sarzynska, A Korpeta, RW Adamiak, M Antczak, ... Nucleic acids research 49 (17), 9625-9632, 2021	19	2021
RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs M Antczak, M Zablocki, T Zok, A Rybarczyk, J Blazewicz, M Szachniuk Bioinformatics 35 (1), 152-155, 2019	19	2019
Computational pipeline for reference-free comparative analysis of RNA 3D structures applied to SARS-CoV-2 UTR models J Gumna, M Antczak, RW Adamiak, JM Bujnicki, SJ Chen, F Ding, ... International Journal of Molecular Sciences 23 (17), 9630, 2022	16	2022

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