Matthew R. Laird
Matthew R. Laird
Senior Developer, Bioinformatics
Verified email at
Cited by
Cited by
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
NY Yu, JR Wagner, MR Laird, G Melli, S Rey, R Lo, P Dao, SC Sahinalp, ...
Bioinformatics 26 (13), 1608-1615, 2010
Ensembl 2018
DR Zerbino, P Achuthan, W Akanni, MR Amode, D Barrell, J Bhai, K Billis, ...
Nucleic acids research 46 (D1), D754-D761, 2018
PSORTb v. 2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis
JL Gardy, MR Laird, F Chen, S Rey, CJ Walsh, M Ester, FSL Brinkman
Bioinformatics 21 (5), 617-623, 2005
InnateDB: systems biology of innate immunity and beyond—recent updates and continuing curation
K Breuer, AK Foroushani, MR Laird, C Chen, A Sribnaia, R Lo, GL Winsor, ...
Nucleic acids research 41 (D1), D1228-D1233, 2013
Ensembl 2017
BL Aken, P Achuthan, W Akanni, MR Amode, F Bernsdorff, J Bhai, K Billis, ...
Nucleic acids research 45 (D1), D635-D642, 2017
InnateDB: facilitating systems‐level analyses of the mammalian innate immune response
DJ Lynn, GL Winsor, C Chan, N Richard, MR Laird, A Barsky, JL Gardy, ...
Molecular systems biology 4 (1), 2008
IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis
BK Dhillon, MR Laird, JA Shay, GL Winsor, R Lo, F Nizam, SK Pereira, ...
Nucleic acids research 43 (W1), W104-W108, 2015
IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets
C Bertelli, MR Laird, KP Williams, ...
Nucleic acids research 45 (W1), W30-W35, 2017
Ensembl 2019
F Cunningham, P Achuthan, W Akanni, J Allen, MR Amode, IM Armean, ...
Nucleic acids research 47 (D1), D745-D751, 2019
PSORTdb: a protein subcellular localization database for bacteria
S Rey, M Acab, JL Gardy, MR Laird, K DeFays, C Lambert, FSL Brinkman
Nucleic acids research 33 (suppl_1), D164-D168, 2005
Improving the specificity of high-throughput ortholog prediction
DL Fulton, YY Li, MR Laird, BGS Horsman, FM Roche, FSL Brinkman
BMC bioinformatics 7 (1), 270, 2006
PSORTdb—an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea
NY Yu, MR Laird, C Spencer, FSL Brinkman
Nucleic acids research 39 (suppl_1), D241-D244, 2010
Curating the innate immunity interactome
DJ Lynn, C Chan, M Naseer, M Yau, R Lo, A Sribnaia, G Ring, J Que, ...
BMC systems biology 4 (1), 117, 2010
IslandViewer update: improved genomic island discovery and visualization
BK Dhillon, TA Chiu, MR Laird, MGI Langille, FSL Brinkman
Nucleic acids research 41 (W1), W129-W132, 2013
OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis
MD Whiteside, GL Winsor, MR Laird, FSL Brinkman
Nucleic acids research 41 (D1), D366-D376, 2013
PSORTdb: expanding the bacteria and archaea protein subcellular localization database to better reflect diversity in cell envelope structures
MA Peabody, MR Laird, C Vlasschaert, R Lo, FSL Brinkman
Nucleic acids research 44 (D1), D663-D668, 2016
Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation
M Ruffier, A Kähäri, M Komorowska, S Keenan, M Laird, I Longden, ...
Database 2017, 2017
MicrobeDB: a locally maintainable database of microbial genomic sequences
MGI Langille, MR Laird, WWL Hsiao, TA Chiu, JA Eisen, FSL Brinkman
Bioinformatics 28 (14), 1947-1948, 2012
GenomeD3Plot: a library for rich, interactive visualizations of genomic data in web applications
MR Laird, MGI Langille, FSL Brinkman
Bioinformatics 31 (20), 3348-3349, 2015
IslandViewer and IslandPlot: flexible identification, visualization, and characterization of microbial genomic regions associated with adaptations of environmental, medical …
JA Shay, BK Dhillon, MR Laird, TA Chiu, MGI Langille, FSL Brinkman
Genome 57 (7), 394-394, 2014
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Articles 1–20