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Mehdi Mirzaie
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A systematic survey of centrality measures for protein-protein interaction networks
M Ashtiani, A Salehzadeh-Yazdi, Z Razaghi-Moghadam, H Hennig, ...
BMC systems biology 12 (1), 1-17, 2018
1092018
Ranked k-medoids: A fast and accurate rank-based partitioning algorithm for clustering large datasets
SMR Zadegan, M Mirzaie, F Sadoughi
Knowledge-Based Systems 39, 133-143, 2013
922013
Updates on drug–target network; facilitating polypharmacology and data integration by growth of DrugBank database
F Barneh, M Jafari, M Mirzaie
Briefings in bioinformatics 17 (6), 1070-1080, 2016
562016
A compartmental model that predicts the effect of social distancing and vaccination on controlling COVID-19
M Dashtbali, M Mirzaie
Scientific Reports 11 (1), 1-11, 2021
522021
Human T‐lymphotropic virus 1 (HTLV‐1) pathogenesis: A systems virology study
SH Mozhgani, M Zarei‐Ghobadi, M Teymoori‐Rad, T Mokhtari‐Azad, ...
Journal of cellular biochemistry 119 (5), 3968-3979, 2018
322018
Signaling network of lipids as a comprehensive scaffold for omics data integration in sputum of COPD patients
SA Jamalkandi, M Mirzaie, M Jafari, H Mehrani, P Shariati, ...
Biochimica et Biophysica Acta (BBA)-Molecular and Cell Biology of Lipids …, 2015
302015
Quantitative HPLC-based metabolomics of some Iranian saffron (Crocus sativus L.) accessions
M Vahedi, M Kabiri, SA Salami, H Rezadoost, M Mirzaie, MR Kanani
Industrial Crops and Products 118, 26-29, 2018
262018
CINNA: an R/CRAN package to decipher Central Informative Nodes in Network Analysis
M Ashtiani, M Mirzaie, M Jafari
Bioinformatics 35 (8), 1436-1437, 2019
242019
Protein complex prediction: A survey
J Zahiri, A Emamjomeh, S Bagheri, A Ivazeh, G Mahdevar, HS Tehrani, ...
Genomics 112 (1), 174-183, 2020
232020
Proteomics and traditional medicine: new aspect in explanation of temperaments
M Jafari, H Rezadoost, M Karimi, M Mirzaie, M Rezaie-Tavirani, ...
Complementary Medicine Research 21 (4), 250-253, 2014
202014
Systems biomedicine of rabies delineates the affected signaling pathways
S Azimzadeh Jamalkandi, SH Mozhgani, H Gholami Pourbadie, ...
Frontiers in microbiology 7, 1688, 2016
192016
Evolutionarily conserved motifs and modules in mitochondrial protein–protein interaction networks
M Jafari, M Sadeghi, M Mirzaie, SA Marashi, M Rezaei-Tavirani
Mitochondrion 13 (6), 668-675, 2013
192013
A logic-based dynamic modeling approach to explicate the evolution of the central dogma of molecular biology
M Jafari, N Ansari-Pour, S Azimzadeh, M Mirzaie
PloS one 12 (12), e0189922, 2017
182017
A distance‐dependent atomic knowledge‐based potential and force for discrimination of native structures from decoys
M Mirzaie, C Eslahchi, H Pezeshk, M Sadeghi
Proteins: Structure, Function, and Bioinformatics 77 (2), 454-463, 2009
182009
Integrated use of bioinformatic resources reveals that co-targeting of histone deacetylases, IKBK and SRC inhibits epithelial-mesenchymal transition in cancer
F Barneh, M Mirzaie, P Nickchi, TZ Tan, JP Thiery, M Piran, M Salimi, ...
Briefings in bioinformatics 20 (2), 717-731, 2019
152019
Exploring biological processes involved in embryonic stem cell differentiation by analyzing proteomic data
M Jafari, M Mirzaie, M Sadeghi, SA Marashi, M Rezaei-Tavirani
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1834 (6), 1063-1069, 2013
152013
An insight to HTLV-1-associated myelopathy/tropical spastic paraparesis (HAM/TSP) pathogenesis; evidence from high-throughput data integration and meta-analysis
SH Mozhgani, M Piran, M Zarei-Ghobadi, M Jafari, SM Jazayeri, ...
Retrovirology 16 (1), 1-11, 2019
142019
Valproic acid inhibits the protective effects of stromal cells against chemotherapy in breast cancer: Insights from proteomics and systems biology
F Barneh, M Salimi, F Goshadrou, M Ashtiani, M Mirzaie, H Zali, M Jafari
Journal of cellular biochemistry 119 (11), 9270-9283, 2018
142018
CINNA: An R package for deciphering Central Informative Nodes in Network Analysis
M Ashtiani, M Mirzaie, M Jafari
BioRxiv, 168757, 2017
132017
Interlog protein network: an evolutionary benchmark of protein interaction networks for the evaluation of clustering algorithms
M Jafari, M Mirzaie, M Sadeghi
BMC bioinformatics 16 (1), 1-9, 2015
132015
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