Jeff Vierstra
Jeff Vierstra
Investigator, Altius Institute for Biomedical Sciences
Verified email at altius.org
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
10853*2012
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
34382015
The accessible chromatin landscape of the human genome
RE Thurman, E Rynes, R Humbert, J Vierstra, MT Maurano, E Haugen, ...
Nature 489 (7414), 75-82, 2012
22222012
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
12082014
An expansive human regulatory lexicon encoded in transcription factor footprints
S Neph, J Vierstra, AB Stergachis, AP Reynolds, E Haugen, B Vernot, ...
Nature 489 (7414), 83-90, 2012
7902012
BEDOPS: high-performance genomic feature operations
S Neph, MS Kuehn, AP Reynolds, E Haugen, RE Thurman, AK Johnson, ...
Bioinformatics 28 (14), 1919-1920, 2012
4672012
An erythroid enhancer of BCL11A subject to genetic variation determines fetal hemoglobin level
DE Bauer, SC Kamran, S Lessard, J Xu, Y Fujiwara, C Lin, Z Shao, ...
Science 342 (6155), 253-257, 2013
4272013
Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution
A Mayer, J Di Iulio, S Maleri, U Eser, J Vierstra, A Reynolds, R Sandstrom, ...
Cell 161 (3), 541-554, 2015
2322015
Conservation of trans-acting circuitry during mammalian regulatory evolution
AB Stergachis, S Neph, R Sandstrom, E Haugen, AP Reynolds, M Zhang, ...
Nature 515 (7527), 365-370, 2014
1942014
Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
J Vierstra, E Rynes, R Sandstrom, M Zhang, T Canfield, RS Hansen, ...
Science 346 (6212), 1007-1012, 2014
1892014
Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo
MT Maurano, E Haugen, R Sandstrom, J Vierstra, A Shafer, R Kaul, ...
Nature genetics 47 (12), 1393, 2015
1432015
Personal and population genomics of human regulatory variation
B Vernot, AB Stergachis, MT Maurano, J Vierstra, S Neph, RE Thurman, ...
Genome research 22 (9), 1689-1697, 2012
1192012
Functional footprinting of regulatory DNA
J Vierstra, A Reik, KH Chang, S Stehling-Sun, Y Zhou, SJ Hinkley, ...
Nature methods 12 (10), 927-930, 2015
1182015
Genome‐scale mapping of DNase I hypersensitivity
S John, PJ Sabo, TK Canfield, K Lee, S Vong, M Weaver, H Wang, ...
Current protocols in molecular biology 103 (1), 21.27. 1-21.27. 20, 2013
832013
Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH
J Vierstra, H Wang, S John, R Sandstrom, JA Stamatoyannopoulos
Nature methods 11 (1), 66, 2014
642014
Genomic footprinting
J Vierstra, JA Stamatoyannopoulos
Nature methods 13 (3), 213-221, 2016
552016
DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements
MS Wilken, JA Brzezinski, A La Torre, K Siebenthall, R Thurman, P Sabo, ...
Epigenetics & chromatin 8 (1), 8, 2015
502015
Integrated functional genomic analysis enables annotation of kidney genome-wide association study loci
KB Sieber, A Batorsky, K Siebenthall, KL Hudkins, JD Vierstra, S Sullivan, ...
Journal of the American Society of Nephrology 30 (3), 421-441, 2019
132019
Methylated cytosines mutate to transcription factor binding sites that drive tetrapod evolution
X He, D Tillo, J Vierstra, KS Syed, C Deng, GJ Ray, ...
Genome biology and evolution 7 (11), 3155-3169, 2015
132015
Index and biological spectrum of accessible DNA elements in the human genome
W Meuleman, A Muratov, E Rynes, J Halow, K Lee, D Bates, M Diegel, ...
BioRxiv, 822510, 2019
122019
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