Jeff Vierstra
Jeff Vierstra
Investigator, Altius Institute for Biomedical Sciences
Verified email at altius.org
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
116212012
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
38102015
The accessible chromatin landscape of the human genome
RE Thurman, E Rynes, R Humbert, J Vierstra, MT Maurano, E Haugen, ...
Nature 489 (7414), 75-82, 2012
23402012
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
13072014
An expansive human regulatory lexicon encoded in transcription factor footprints
S Neph, J Vierstra, AB Stergachis, AP Reynolds, E Haugen, B Vernot, ...
Nature 489 (7414), 83-90, 2012
8112012
BEDOPS: high-performance genomic feature operations
S Neph, MS Kuehn, AP Reynolds, E Haugen, RE Thurman, AK Johnson, ...
Bioinformatics 28 (14), 1919-1920, 2012
5162012
An erythroid enhancer of BCL11A subject to genetic variation determines fetal hemoglobin level
DE Bauer, SC Kamran, S Lessard, J Xu, Y Fujiwara, C Lin, Z Shao, ...
Science 342 (6155), 253-257, 2013
4552013
Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution
A Mayer, J Di Iulio, S Maleri, U Eser, J Vierstra, A Reynolds, R Sandstrom, ...
Cell 161 (3), 541-554, 2015
2502015
Conservation of trans-acting circuitry during mammalian regulatory evolution
AB Stergachis, S Neph, R Sandstrom, E Haugen, AP Reynolds, M Zhang, ...
Nature 515 (7527), 365-370, 2014
2072014
Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
J Vierstra, E Rynes, R Sandstrom, M Zhang, T Canfield, RS Hansen, ...
Science 346 (6212), 1007-1012, 2014
1982014
Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo
MT Maurano, E Haugen, R Sandstrom, J Vierstra, A Shafer, R Kaul, ...
Nature genetics 47 (12), 1393, 2015
1642015
Functional footprinting of regulatory DNA
J Vierstra, A Reik, KH Chang, S Stehling-Sun, Y Zhou, SJ Hinkley, ...
Nature methods 12 (10), 927-930, 2015
1212015
Personal and population genomics of human regulatory variation
B Vernot, AB Stergachis, MT Maurano, J Vierstra, S Neph, RE Thurman, ...
Genome research 22 (9), 1689-1697, 2012
1192012
Genome‐scale mapping of DNase I hypersensitivity
S John, PJ Sabo, TK Canfield, K Lee, S Vong, M Weaver, H Wang, ...
Current protocols in molecular biology 103 (1), 21.27. 1-21.27. 20, 2013
862013
Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH
J Vierstra, H Wang, S John, R Sandstrom, JA Stamatoyannopoulos
Nature methods 11 (1), 66, 2014
652014
Genomic footprinting
J Vierstra, JA Stamatoyannopoulos
Nature methods 13 (3), 213-221, 2016
592016
DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements
MS Wilken, JA Brzezinski, A La Torre, K Siebenthall, R Thurman, P Sabo, ...
Epigenetics & chromatin 8 (1), 1-17, 2015
502015
Global reference mapping of human transcription factor footprints
J Vierstra, J Lazar, R Sandstrom, J Halow, K Lee, D Bates, M Diegel, ...
Nature 583 (7818), 729-736, 2020
272020
Index and biological spectrum of human DNase I hypersensitive sites
W Meuleman, A Muratov, E Rynes, J Halow, K Lee, D Bates, M Diegel, ...
Nature 584 (7820), 244-251, 2020
212020
eFORGE v2. 0: updated analysis of cell type-specific signal in epigenomic data
CE Breeze, AP Reynolds, J Van Dongen, I Dunham, J Lazar, S Neph, ...
Bioinformatics 35 (22), 4767-4769, 2019
202019
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