Jeff Vierstra
Jeff Vierstra
Investigator, Altius Institute for Biomedical Sciences
Verified email at
Cited by
Cited by
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
The accessible chromatin landscape of the human genome
RE Thurman, E Rynes, R Humbert, J Vierstra, MT Maurano, E Haugen, ...
Nature 489 (7414), 75-82, 2012
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
An expansive human regulatory lexicon encoded in transcription factor footprints
S Neph, J Vierstra, AB Stergachis, AP Reynolds, E Haugen, B Vernot, ...
Nature 489 (7414), 83-90, 2012
BEDOPS: high-performance genomic feature operations
S Neph, MS Kuehn, AP Reynolds, E Haugen, RE Thurman, AK Johnson, ...
Bioinformatics 28 (14), 1919-1920, 2012
An erythroid enhancer of BCL11A subject to genetic variation determines fetal hemoglobin level
DE Bauer, SC Kamran, S Lessard, J Xu, Y Fujiwara, C Lin, Z Shao, ...
Science 342 (6155), 253-257, 2013
Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution
A Mayer, J Di Iulio, S Maleri, U Eser, J Vierstra, A Reynolds, R Sandstrom, ...
Cell 161 (3), 541-554, 2015
Conservation of trans-acting circuitry during mammalian regulatory evolution
AB Stergachis, S Neph, R Sandstrom, E Haugen, AP Reynolds, M Zhang, ...
Nature 515 (7527), 365-370, 2014
Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
J Vierstra, E Rynes, R Sandstrom, M Zhang, T Canfield, RS Hansen, ...
Science 346 (6212), 1007-1012, 2014
Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo
MT Maurano, E Haugen, R Sandstrom, J Vierstra, A Shafer, R Kaul, ...
Nature genetics 47 (12), 1393, 2015
Personal and population genomics of human regulatory variation
B Vernot, AB Stergachis, MT Maurano, J Vierstra, S Neph, RE Thurman, ...
Genome research 22 (9), 1689-1697, 2012
Functional footprinting of regulatory DNA
J Vierstra, A Reik, KH Chang, S Stehling-Sun, Y Zhou, SJ Hinkley, ...
Nature methods 12 (10), 927-930, 2015
Genome‐scale mapping of DNase I hypersensitivity
S John, PJ Sabo, TK Canfield, K Lee, S Vong, M Weaver, H Wang, ...
Current protocols in molecular biology 103 (1), 21.27. 1-21.27. 20, 2013
Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH
J Vierstra, H Wang, S John, R Sandstrom, JA Stamatoyannopoulos
Nature methods 11 (1), 66, 2014
Genomic footprinting
J Vierstra, JA Stamatoyannopoulos
Nature methods 13 (3), 213-221, 2016
DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements
MS Wilken, JA Brzezinski, A La Torre, K Siebenthall, R Thurman, P Sabo, ...
Epigenetics & chromatin 8 (1), 8, 2015
Integrated functional genomic analysis enables annotation of kidney genome-wide association study loci
KB Sieber, A Batorsky, K Siebenthall, KL Hudkins, JD Vierstra, S Sullivan, ...
Journal of the American Society of Nephrology 30 (3), 421-441, 2019
Methylated cytosines mutate to transcription factor binding sites that drive tetrapod evolution
X He, D Tillo, J Vierstra, KS Syed, C Deng, GJ Ray, ...
Genome biology and evolution 7 (11), 3155-3169, 2015
Index and biological spectrum of accessible DNA elements in the human genome
W Meuleman, A Muratov, E Rynes, J Halow, K Lee, D Bates, M Diegel, ...
BioRxiv, 822510, 2019
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