Herbert M Sauro
Herbert M Sauro
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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
M Hucka, A Finney, HM Sauro, H Bolouri, JC Doyle, H Kitano, AP Arkin, ...
Bioinformatics 19 (4), 524-531, 2003
The systems biology graphical notation
NL Novère, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ...
Nature biotechnology 27 (8), 735-741, 2009
BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
N Le Novere, B Bornstein, A Broicher, M Courtot, M Donizelli, H Dharuri, ...
Nucleic acids research 34 (suppl_1), D689-D691, 2006
Minimum information requested in the annotation of biochemical models (MIRIAM)
NL Novère, A Finney, M Hucka, US Bhalla, F Campagne, J Collado-Vides, ...
Nature biotechnology 23 (12), 1509-1515, 2005
Metabolic control and its analysis: additional relationships between elasticities and control coefficients
DA Fell, HM Sauro
European Journal of Biochemistry 148 (3), 555-561, 1985
Next generation simulation tools: the Systems Biology Workbench and BioSPICE integration
HM Sauro, M Hucka, A Finney, C Wellock, H Bolouri, J Doyle, H Kitano
Omics A Journal of Integrative Biology 7 (4), 355-372, 2003
Transcriptional dynamics of the embryonic stem cell switch
V Chickarmane, C Troein, UA Nuber, HM Sauro, C Peterson
PLoS computational biology 2 (9), e123, 2006
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology
M Galdzicki, KP Clancy, E Oberortner, M Pocock, JY Quinn, CA Rodriguez, ...
Nature biotechnology 32 (6), 545-550, 2014
Quantitative analysis of signaling networks
HM Sauro, BN Kholodenko
Progress in biophysics and molecular biology 86 (1), 5-43, 2004
TinkerCell: modular CAD tool for synthetic biology
D Chandran, FT Bergmann, HM Sauro
Journal of biological engineering 3, 1-17, 2009
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
Designing and engineering evolutionary robust genetic circuits
SC Sleight, BA Bartley, JA Lieviant, HM Sauro
Journal of biological engineering 4, 1-20, 2010
SCAMP: a general-purpose simulator and metabolic control analysis program
HM Sauro
Bioinformatics 9 (4), 441-450, 1993
In-Fusion BioBrick assembly and re-engineering
SC Sleight, BA Bartley, JA Lieviant, HM Sauro
Nucleic acids research 38 (8), 2624-2636, 2010
Sensitivity analysis of stoichiometric networks: an extension of metabolic control analysis to non-steady state trajectories
BP Ingalls, HM Sauro
Journal of theoretical biology 222 (1), 23-36, 2003
Minimum information about a simulation experiment (MIASE)
D Waltemath, R Adams, DA Beard, FT Bergmann, US Bhalla, R Britten, ...
PLoS computational biology 7 (4), e1001122, 2011
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project
FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ...
BMC bioinformatics 15, 1-9, 2014
Metabolic control and its analysis: extensions to the theory and matrix method
HM Sauro, JR Small, DA Fell
European journal of biochemistry 165 (1), 215-221, 1987
libRoadRunner: a high performance SBML simulation and analysis library
ET Somogyi, JM Bouteiller, G JA, M König, JK Medley, MH Swat, ...
Bioinformatics 31 (20), 3315-21, 2015
33 JARNAC: a system for interactive metabolic analysis
HM Sauro
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