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Michael Brudno
Michael Brudno
Professor of Computer Science, University of Toronto; Chief Data Scientist, UHN
Verifierad e-postadress på cs.toronto.edu
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Genome sequence of the Brown Norway rat yields insights into mammalian evolution
RA Gibbs, et al (Rat Genome Sequencing Consortium)
Nature 428 (6982), 493-521, 2004
23662004
The genetic landscape of a cell
M Costanzo, A Baryshnikova, J Bellay, Y Kim, ED Spear, CS Sevier, ...
science 327 (5964), 425-431, 2010
22992010
ProbCons: Probabilistic consistency-based multiple sequence alignment
CB Do, MSP Mahabhashyam, M Brudno, S Batzoglou
Genome research 15 (2), 330-340, 2005
13832005
LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA
M Brudno, CB Do, GM Cooper, MF Kim, E Davydov, ED Green, A Sidow, ...
Genome research 13 (4), 721-731, 2003
12612003
Similarity network fusion for aggregating data types on a genomic scale
B Wang, AM Mezlini, F Demir, M Fiume, Z Tu, M Brudno, B Haibe-Kains, ...
Nature methods 11 (3), 333-337, 2014
11642014
VISTA: visualizing global DNA sequence alignments of arbitrary length
C Mayor, M Brudno, JR Schwartz, A Poliakov, EM Rubin, KA Frazer, ...
Bioinformatics 16 (11), 1046-1047, 2000
10412000
The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data
S Köhler, SC Doelken, CJ Mungall, S Bauer, HV Firth, I Bailleul-Forestier, ...
Nucleic acids research 42 (D1), D966-D974, 2014
8172014
SHRiMP: accurate mapping of short color-space reads
SM Rumble, P Lacroute, AV Dalca, M Fiume, A Sidow, M Brudno
PLoS computational biology 5 (5), e1000386, 2009
7272009
Computational methods for discovering structural variation with next-generation sequencing
P Medvedev, M Stanciu, M Brudno
Nature methods 6 (11), S13-S20, 2009
6472009
Snowflock: rapid virtual machine cloning for cloud computing
HA Lagar-Cavilla, JA Whitney, AM Scannell, P Patchin, SM Rumble, ...
Proceedings of the 4th ACM European conference on Computer systems, 1-12, 2009
5702009
Genomic analysis of diffuse intrinsic pontine gliomas identifies three molecular subgroups and recurrent activating ACVR1 mutations
P Buczkowicz, C Hoeman, P Rakopoulos, S Pajovic, L Letourneau, ...
Nature genetics 46 (5), 451-456, 2014
5122014
The human phenotype ontology in 2017
S Köhler, NA Vasilevsky, M Engelstad, E Foster, J McMurry, S Aymé, ...
Nucleic acids research 45 (D1), D865-D876, 2017
4912017
Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources
S Köhler, L Carmody, N Vasilevsky, JOB Jacobsen, D Danis, JP Gourdine, ...
Nucleic acids research 47 (D1), D1018-D1027, 2019
4732019
Glocal alignment: finding rearrangements during alignment
M Brudno, S Malde, A Poliakov, CB Do, O Couronne, I Dubchak, ...
Bioinformatics 19 (suppl 1), i54, 2003
4522003
SHRiMP2: sensitive yet practical short read mapping
M David, M Dzamba, D Lister, L Ilie, M Brudno
Bioinformatics 27 (7), 1011-1012, 2011
4062011
Active conservation of noncoding sequences revealed by three-way species comparisons
I Dubchak, M Brudno, GG Loots, L Pachter, C Mayor, EM Rubin, ...
Genome research 10 (9), 1304-1306, 2000
3932000
The Matchmaker Exchange: a platform for rare disease gene discovery
AA Philippakis, DR Azzariti, S Beltran, AJ Brookes, CA Brownstein, ...
Human mutation 36 (10), 915-921, 2015
3712015
Conservation of core gene expression in vertebrate tissues
ET Chan, GT Quon, G Chua, T Babak, M Trochesset, RA Zirngibl, J Aubin, ...
Journal of biology 8 (3), 1-17, 2009
3662009
Whole-genome sequencing expands diagnostic utility and improves clinical management in paediatric medicine
DJ Stavropoulos, D Merico, R Jobling, S Bowdin, N Monfared, ...
NPJ genomic medicine 1 (1), 1-9, 2016
2852016
International cooperation to enable the diagnosis of all rare genetic diseases
KM Boycott, A Rath, JX Chong, T Hartley, FS Alkuraya, G Baynam, ...
The American Journal of Human Genetics 100 (5), 695-705, 2017
2542017
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Artiklar 1–20