W. Hayes McDonald
W. Hayes McDonald
Research Assistant Professor of Biochemistry, Vanderbilt University
Verified email at
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Cited by
DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics
DL Tabb, WH McDonald, JR Yates
Journal of proteome research 1 (1), 21-26, 2002
Role of Rpn11 Metalloprotease in Deubiquitination and Degradation by the 26S Proteasome
R Verma, L Aravind, R Oania, WH McDonald, JR Yates III, EV Koonin, ...
Science 298 (5593), 611-615, 2002
Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis
BM Tyler, S Tripathy, X Zhang, P Dehal, RHY Jiang, A Aerts, ...
Science 313 (5791), 1261-1266, 2006
Sirt3-mediated deacetylation of evolutionarily conserved lysine 122 regulates MnSOD activity in response to stress
R Tao, MC Coleman, JD Pennington, O Ozden, SH Park, H Jiang, HS Kim, ...
Molecular cell 40 (6), 893-904, 2010
Shotgun identification of protein modifications from protein complexes and lens tissue
MJ MacCoss, WH McDonald, A Saraf, R Sadygov, JM Clark, JJ Tasto, ...
Proceedings of the National Academy of Sciences 99 (12), 7900-7905, 2002
Mus81-Eme1 are essential components of a Holliday junction resolvase
MN Boddy, PHL Gaillard, WH McDonald, P Shanahan, JR Yates, ...
Cell 107 (4), 537-548, 2001
Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5
RAM De Bruin, WH McDonald, TI Kalashnikova, J Yates, C Wittenberg
Cell 117 (7), 887-898, 2004
Shotgun proteomics and biomarker discovery
WH McDonald, JR Yates Iii
Disease markers 18 (2), 99-105, 2002
MS1, MS2, and SQT—three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications
WH McDonald, DL Tabb, RG Sadygov, MJ MacCoss, J Venable, ...
Rapid Communications in Mass Spectrometry 18 (18), 2162-2168, 2004
Comparison of three directly coupled HPLC MS/MS strategies for identification of proteins from complex mixtures: single-dimension LC-MS/MS, 2-phase MudPIT, and 3-phase MudPIT
WH McDonald, R Ohi, DT Miyamoto, TJ Mitchison, JR Yates III
International Journal of Mass Spectrometry 219 (1), 245-251, 2002
Assigning function to yeast proteins by integration of technologies
TR Hazbun, L Malmström, S Anderson, BJ Graczyk, B Fox, M Riffle, ...
Molecular cell 12 (6), 1353-1365, 2003
Tea4p links microtubule plus ends with the formin for3p in the establishment of cell polarity
SG Martin, WH McDonald, JR Yates, F Chang
Developmental cell 8 (4), 479-491, 2005
Azospirillum Genomes Reveal Transition of Bacteria from Aquatic to Terrestrial Environments
F Wisniewski-Dyé, K Borziak, G Khalsa-Moyers, G Alexandre, ...
PLoS genetics 7 (12), e1002430, 2011
Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs
MD Ohi, AJ Link, L Ren, JL Jennings, WH McDonald, KL Gould
Molecular and cellular biology, 2002
Identification of proteins at active, stalled, and collapsed replication forks using isolation of proteins on nascent DNA (iPOND) coupled with mass spectrometry
BM Sirbu, WH McDonald, H Dungrawala, A Badu-Nkansah, ...
Journal of Biological Chemistry 288 (44), 31458-31467, 2013
Automatic quality assessment of peptide tandem mass spectra
M Bern, D Goldberg, WH McDonald, JR Yates III
Bioinformatics 20 (suppl_1), i49-i54, 2004
Staphylococcus aureus LukAB cytotoxin kills human neutrophils by targeting the CD11b subunit of the integrin Mac-1
AL DuMont, P Yoong, CJ Day, F Alonzo III, WH McDonald, MP Jennings, ...
Proceedings of the National Academy of Sciences 110 (26), 10794-10799, 2013
Swi1 and Swi3 are components of a replication fork protection complex in fission yeast
E Noguchi, C Noguchi, WH McDonald, JR Yates III, P Russell
Molecular and cellular biology 24 (19), 8342-8355, 2004
Carcinoma and stromal enzyme activity profiles associated with breast tumor growth in vivo
N Jessani, M Humphrey, WH McDonald, S Niessen, K Masuda, ...
Proceedings of the National Academy of Sciences 101 (38), 13756-13761, 2004
Proteolysis-independent regulation of the transcription factor Met4 by a single Lys 48-linked ubiquitin chain
K Flick, I Ouni, JA Wohlschlegel, C Capati, WH McDonald, JR Yates 3rd, ...
Nature cell biology 6 (7), 634-641, 2004
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