| Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012 | 10085 | 2012 |
| A framework for human microbiome research Nature 486 (7402), 215-221, 2012 | 2377* | 2012 |
| Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis MB Scholz, CC Lo, PSG Chain Current opinion in biotechnology 23 (1), 9-15, 2012 | 454 | 2012 |
| Saliva microbiomes distinguish caries-active from healthy human populations F Yang, X Zeng, K Ning, KL Liu, CC Lo, W Wang, J Chen, D Wang, ... The ISME journal 6 (1), 1-10, 2012 | 394 | 2012 |
| Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing W Fischer, VV Ganusov, EE Giorgi, PT Hraber, BF Keele, T Leitner, ... PloS one 5 (8), e12303, 2010 | 343 | 2010 |
| Advances and challenges in metatranscriptomic analysis M Shakya, CC Lo, PSG Chain Frontiers in genetics 10, 472554, 2019 | 324 | 2019 |
| HIV sequence compendium 2001 C Kuiken, B Foley, B Hahn, P Marx, F McCutchan, J Mellors, S Wolinsky, ... Theoretical Biology and Biophysics Group, Los Alamos National Laboratory …, 2001 | 293 | 2001 |
| A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities K Leung, H Zahn, T Leaver, KM Konwar, NW Hanson, AP Pagé, CC Lo, ... Proceedings of the National Academy of Sciences 109 (20), 7665-7670, 2012 | 288 | 2012 |
| Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia M Martinez-Garcia, DM Brazel, BK Swan, C Arnosti, PSG Chain, ... PloS one 7 (4), e35314, 2012 | 267 | 2012 |
| Quantitative deep sequencing reveals dynamic HIV-1 escape and large population shifts during CCR5 antagonist therapy in vivo AMN Tsibris, B Korber, R Arnaout, C Russ, CC Lo, T Leitner, B Gaschen, ... PloS one 4 (5), e5683, 2009 | 256 | 2009 |
| Rapid evaluation and quality control of next generation sequencing data with FaQCs CC Lo, PSG Chain BMC bioinformatics 15, 1-8, 2014 | 210 | 2014 |
| Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage JA Dodsworth, PC Blainey, SK Murugapiran, WD Swingley, CA Ross, ... Nature communications 4 (1), 1854, 2013 | 198 | 2013 |
| Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform PE Li, CC Lo, JJ Anderson, KW Davenport, KA Bishop-Lilly, Y Xu, ... Nucleic acids research 45 (1), 67-80, 2017 | 178 | 2017 |
| Genomic Comparison of Escherichia coli O104:H4 Isolates from 2009 and 2011 Reveals Plasmid, and Prophage Heterogeneity, Including Shiga Toxin Encoding … SA Ahmed, J Awosika, C Baldwin, KA Bishop-Lilly, B Biswas, S Broomall, ... PloS one 7 (11), e48228, 2012 | 136 | 2012 |
| Under-detection of endospore-forming Firmicutes in metagenomic data S Filippidou, T Junier, T Wunderlin, CC Lo, PE Li, PS Chain, P Junier Computational and structural biotechnology journal 13, 299-306, 2015 | 118 | 2015 |
| Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing G Xie, PSG Chain, CC Lo, KL Liu, J Gans, J Merritt, F Qi Molecular oral microbiology 25 (6), 391-405, 2010 | 112 | 2010 |
| Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life M Shakya, SA Ahmed, KW Davenport, MC Flynn, CC Lo, PSG Chain Scientific reports 10 (1), 1723, 2020 | 84 | 2020 |
| Hi-C deconvolution of a human gut microbiome yields high-quality draft genomes and reveals plasmid-genome interactions MO Press, AH Wiser, ZN Kronenberg, KW Langford, M Shakya, CC Lo, ... biorxiv, 198713, 2017 | 81 | 2017 |
| Cohesion group approach for evolutionary analysis of aspartokinase, an enzyme that feeds a branched network of many biochemical pathways CC Lo, CA Bonner, G Xie, M D'Souza, RA Jensen Microbiology and Molecular Biology Reviews 73 (4), 594-651, 2009 | 73 | 2009 |
| Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome MS Fitzsimons, M Novotny, CC Lo, AEK Dichosa, JL Yee-Greenbaum, ... Genome research 23 (5), 878-888, 2013 | 70 | 2013 |
Patrick S. G. ChainLos Alamos National LaboratoryVerified email at lanl.gov
