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Jeremy Buhler
Jeremy Buhler
professor of computer science, Washington university
Verified email at wustl.edu - Homepage
Title
Cited by
Cited by
Year
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
T Ideker, V Thorsson, JA Ranish, R Christmas, J Buhler, JK Eng, ...
Science 292 (5518), 929-934, 2001
25702001
Glycan foraging in vivo by an intestine-adapted bacterial symbiont
JL Sonnenburg, J Xu, DD Leip, CH Chen, BP Westover, J Weatherford, ...
Science 307 (5717), 1955-1959, 2005
12232005
Finding motifs using random projections
J Buhler, M Tompa
Proceedings of the fifth annual international conference on Computational …, 2001
8042001
Efficient large-scale sequence comparison by locality-sensitive hashing
J Buhler
Bioinformatics 17 (5), 419-428, 2001
3432001
Method and apparatus for performing similarity searching on a data stream with respect to a query string
JD Buhler, RD Chamberlain, MA Franklin, K Gyang, AC Jacob, ...
US Patent 7,917,299, 2011
2302011
The genomics education partnership: successful integration of research into laboratory classes at a diverse group of undergraduate institutions
CD Shaffer, C Alvarez, C Bailey, D Barnard, S Bhalla, C Chandrasekaran, ...
CBE—Life Sciences Education 9 (1), 55-69, 2010
2242010
Designing seeds for similarity search in genomic DNA
J Buhler, U Keich, Y Sun
Proceedings of the seventh annual international conference on Research in …, 2003
1912003
Genomics education partnership
D Lopatto, C Alvarez, D Barnard, C Chandrasekaran, HM Chung, C Du, ...
Science 322 (5902), 684-685, 2008
1822008
Dapple: improved techniques for finding spots on DNA microarrays
J Buhler, T Ideker, D Haynor
University of Washington CSE Technical Report UWTR, 08-05, 2000
1802000
A course-based research experience: how benefits change with increased investment in instructional time
CD Shaffer, CJ Alvarez, AE Bednarski, D Dunbar, AL Goodman, C Reinke, ...
CBE—Life Sciences Education 13 (1), 111-130, 2014
1562014
Method and Apparatus for Protein Sequence Alignment using FPGA Devices
R Chamberlain, J Buhler, A Jacob, J Lancaster, B Harris
US Patent App. 11/836,947, 2008
1322008
Designing multiple simultaneous seeds for DNA similarity search
Y Sun, J Buhler
Proceedings of the eighth annual international conference on Research in …, 2004
1302004
Biosequence Similarity Search on the Mercury System
P Krishnamurthy, J Buhler, R Chamberlain, M Franklin, K Gyang, A Jacob, ...
The Journal of VLSI Signal Processing Systems for Signal, Image, and Video …, 2007
1132007
Operon prediction without a training set
BP Westover, JD Buhler, JL Sonnenburg, JI Gordon
Bioinformatics 21 (7), 880-888, 2005
1102005
Drosophila Muller F Elements Maintain a Distinct Set of Genomic Properties Over 40 Million Years of Evolution
W Leung, CD Shaffer, LK Reed, ST Smith, W Barshop, W Dirkes, ...
G3: Genes, Genomes, Genetics 5 (5), 719-740, 2015
942015
Mercury BLASTP: Accelerating protein sequence alignment
A Jacob, J Lancaster, J Buhler, B Harris, RD Chamberlain
ACM Transactions on Reconfigurable Technology and Systems (TRETS) 1 (2), 1-44, 2008
942008
Method and apparatus for performing similarity searching
JD Buhler, RD Chamberlain, MA Franklin, K Gyang, AC Jacob, ...
US Patent 8,515,682, 2013
822013
FPGA-accelerated seed generation in Mercury BLASTP
A Jacob, J Lancaster, J Buhler, RD Chamberlain
15th Annual IEEE Symposium on Field-Programmable Custom Computing Machines …, 2007
792007
A central support system can facilitate implementation and sustainability of a classroom-based undergraduate research experience (CURE) in genomics
D Lopatto, C Hauser, CJ Jones, D Paetkau, V Chandrasekaran, D Dunbar, ...
CBE—Life Sciences Education 13 (4), 711-723, 2014
722014
Acceleration of ungapped extension in Mercury BLAST
J Lancaster, J Buhler, RD Chamberlain
Microprocessors and microsystems 33 (4), 281-289, 2009
712009
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