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Qing Nie
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Inference and analysis of cell-cell communication using CellChat
S Jin, CF Guerrero-Juarez, L Zhang, I Chang, R Ramos, CH Kuan, ...
Nature communications 12 (1), 1088, 2021
23342021
Differentialequations. jl–a performant and feature-rich ecosystem for solving differential equations in julia
C Rackauckas, Q Nie
Journal of open research software 5 (1), 15-15, 2017
13122017
Do morphogen gradients arise by diffusion?
AD Lander, Q Nie, FYM Wan
Developmental cell 2 (6), 785-796, 2002
5152002
Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds
CF Guerrero-Juarez, PH Dedhia, S Jin, R Ruiz-Vega, D Ma, Y Liu, ...
Nature communications 10 (1), 650, 2019
3852019
Nonlinear simulation of tumor growth
V Cristini, J Lowengrub, Q Nie
Journal of mathematical biology 46, 191-224, 2003
3712003
Cell lineages and the logic of proliferative control
AD Lander, KK Gokoffski, FYM Wan, Q Nie, AL Calof
PLoS biology 7 (1), e1000015, 2009
3462009
An Ovol2-Zeb1 mutual inhibitory circuit governs bidirectional and multi-step transition between epithelial and mesenchymal states
T Hong, K Watanabe, CH Ta, A Villarreal-Ponce, Q Nie, X Dai
PLoS computational biology 11 (11), e1004569, 2015
2722015
Complex Regulation of cyp26a1 Creates a Robust Retinoic Acid Gradient in the Zebrafish Embryo
RJ White, Q Nie, AD Lander, TF Schilling
PLoS biology 5 (11), e304, 2007
2632007
Inferring spatial and signaling relationships between cells from single cell transcriptomic data
Z Cang, Q Nie
Nature communications 11 (1), 2084, 2020
2182020
Formation of the BMP activity gradient in the Drosophila embryo
CM Mizutani, Q Nie, FYM Wan, YT Zhang, P Vilmos, R Sousa-Neves, ...
Developmental cell 8 (6), 915-924, 2005
1952005
Free extracellular diffusion creates the Dpp morphogen gradient of the Drosophila wing disc
S Zhou, WC Lo, JL Suhalim, MA Digman, E Gratton, Q Nie, AD Lander
Current Biology 22 (8), 668-675, 2012
1622012
Efficient semi-implicit schemes for stiff systems
Q Nie, YT Zhang, R Zhao
Journal of Computational Physics 214 (2), 521-537, 2006
1462006
Defining epidermal basal cell states during skin homeostasis and wound healing using single-cell transcriptomics
D Haensel, S Jin, P Sun, R Cinco, M Dragan, Q Nguyen, Z Cang, Y Gong, ...
Cell reports 30 (11), 3932-3947. e6, 2020
1422020
Robust spatial sensing of mating pheromone gradients by yeast cells
TI Moore, CS Chou, Q Nie, NL Jeon, TM Yi
PloS one 3 (12), e3865, 2008
1402008
Cell lineage and communication network inference via optimization for single-cell transcriptomics
S Wang, M Karikomi, AL MacLean, Q Nie
Nucleic acids research 47 (11), e66-e66, 2019
1352019
Feedback regulation in multistage cell lineages
WC Lo, CS Chou, KK Gokoffski, FYM Wan, AD Lander, AL Calof, Q Nie
Mathematical biosciences and engineering: MBE 6 (1), 59, 2009
1322009
Transcriptional mechanisms link epithelial plasticity to adhesion and differentiation of epidermal progenitor cells
B Lee, A Villarreal-Ponce, M Fallahi, J Ovadia, P Sun, QC Yu, S Ito, ...
Developmental cell 29 (1), 47-58, 2014
1212014
Single cell transcriptomics of human epidermis identifies basal stem cell transition states
S Wang, ML Drummond, CF Guerrero-Juarez, E Tarapore, AL MacLean, ...
Nature communications 11 (1), 4239, 2020
1172020
The landscape of cell–cell communication through single-cell transcriptomics
AA Almet, Z Cang, S Jin, Q Nie
Current opinion in systems biology 26, 12-23, 2021
1152021
scAI: an unsupervised approach for the integrative analysis of parallel single-cell transcriptomic and epigenomic profiles
S Jin, L Zhang, Q Nie
Genome biology 21, 1-19, 2020
1132020
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Articles 1–20