marcin joachimiak
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The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families
S Yooseph, G Sutton, DB Rusch, AL Halpern, SJ Williamson, ...
PLoS Biol 5 (3), e16, 2007
Co-evolution of proteins with their interaction partners
CS Goh, AA Bogan, M Joachimiak, D Walther, FE Cohen
Journal of molecular biology 299 (2), 283-293, 2000
Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray
Z Bozdech, J Zhu, MP Joachimiak, FE Cohen, B Pulliam, JL DeRisi
Genome biology 4 (2), 1-15, 2003
MicrobesOnline: an integrated portal for comparative and functional genomics
PS Dehal, MP Joachimiak, MN Price, JT Bates, JK Baumohl, D Chivian, ...
Nucleic acids research 38 (suppl_1), D396-D400, 2010
KBase: the United States department of energy systems biology knowledgebase
AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ...
Nature biotechnology 36 (7), 566, 2018
Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough
A Mukhopadhyay, AM Redding, MP Joachimiak, AP Arkin, SE Borglin, ...
Journal of bacteriology 189 (16), 5996-6010, 2007
JColorGrid: software for the visualization of biological measurements
MP Joachimiak, JL Weisman, BCH May
BMC bioinformatics 7 (1), 225, 2006
Effects of genetic variation on the E. coli host-circuit interface
S Cardinale, MP Joachimiak, AP Arkin
Cell reports 4 (2), 231-237, 2013
Global transcriptional, physiological, and metabolite analyses of the responses of Desulfovibrio vulgaris Hildenborough to salt adaptation
Z He, A Zhou, E Baidoo, Q He, MP Joachimiak, P Benke, R Phan, ...
Applied and Environmental Microbiology 76 (5), 1574-1586, 2010
Response of Desulfovibrio vulgaris to alkaline stress
S Stolyar, Q He, MP Joachimiak, Z He, ZK Yang, SE Borglin, DC Joyner, ...
Journal of bacteriology 189 (24), 8944-8952, 2007
Functional responses of methanogenic archaea to syntrophic growth
CB Walker, AM Redding-Johanson, EE Baidoo, L Rajeev, Z He, ...
The ISME journal 6 (11), 2045-2055, 2012
Impact of elevated nitrate on sulfate-reducing bacteria: a comparative study of Desulfovibrio vulgaris
Q He, Z He, DC Joyner, M Joachimiak, MN Price, ZK Yang, HCB Yen, ...
The ISME journal 4 (11), 1386-1397, 2010
Hydrogen peroxide‐induced oxidative stress responses in Desulfovibrio vulgaris Hildenborough
A Zhou, Z He, AM Redding‐Johanson, A Mukhopadhyay, CL Hemme, ...
Environmental microbiology 12 (10), 2645-2657, 2010
Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state
ME Clark, Z He, AM Redding, MP Joachimiak, JD Keasling, JZ Zhou, ...
BMC genomics 13 (1), 138, 2012
Application of phenotypic microarrays to environmental microbiology
S Borglin, D Joyner, KM DeAngelis, J Khudyakov, P D’haeseleer, ...
Current opinion in biotechnology 23 (1), 41-48, 2012
Snapshot of iron response in Shewanella oneidensis by gene network reconstruction
Y Yang, DP Harris, F Luo, W Xiong, M Joachimiak, L Wu, P Dehal, ...
BMC genomics 10 (1), 131, 2009
The DOE systems biology knowledgebase (KBase)
AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ...
BioRxiv, 096354, 2016
Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation
DA Elias, A Mukhopadhyay, MP Joachimiak, EC Drury, AM Redding, ...
Nucleic acids research 37 (9), 2926-2939, 2009
The impact of whole genome sequence data on drug discovery—a malaria case study
MP Joachimiak, C Chang, PJ Rosenthal, FE Cohen
Molecular Medicine 7 (10), 698-710, 2001
Characterization of NaCl tolerance in Desulfovibrio vulgaris Hildenborough through experimental evolution
A Zhou, E Baidoo, Z He, A Mukhopadhyay, JK Baumohl, P Benke, ...
The ISME journal 7 (9), 1790-1802, 2013
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