Paul Macklin
Paul Macklin
Associate Professor - Intelligent Systems Engineering - Indiana University
Verified email at MathCancer.org - Homepage
Title
Cited by
Cited by
Year
Nonlinear modelling of cancer: bridging the gap between cells and tumours
JS Lowengrub, HB Frieboes, F Jin, YL Chuang, X Li, P Macklin, SM Wise, ...
Nonlinearity 23 (1), R1, 2009
5102009
Multiscale Cancer Modeling
TS Deisboeck, Z Wang, P Macklin, V Cristini
Annual Review of Biomedical Engineering 13, 127-155, 2011
4642011
Multiscale modelling and nonlinear simulation of vascular tumour growth
P Macklin, S McDougall, ARA Anderson, MAJ Chaplain, V Cristini, ...
Journal of mathematical biology 58 (4), 765-798, 2009
3802009
Computer simulation of glioma growth and morphology
HB Frieboes, JS Lowengrub, S Wise, X Zheng, P Macklin, EL Bearer, ...
Neuroimage 37, S59-S70, 2007
2362007
Nonlinear simulation of the effect of microenvironment on tumor growth
P Macklin, J Lowengrub
Journal of theoretical biology 245 (4), 677-704, 2007
2082007
Patient-calibrated agent-based modelling of ductal carcinoma in situ (DCIS): From microscopic measurements to macroscopic predictions of clinical progression
P Macklin, ME Edgerton, AM Thompson, V Cristini
J. Theor. Biol. 301, 122-140, 2012
1862012
PhysiCell: an Open Source Physics-Based Cell Simulator for 3-D Multicellular Systems
A Ghaffarizadeh, R Heiland, SH Friedman, SM Mumenthaler, P Macklin
PLoS Computational Biology 14 (2), e1005991, 2018
1452018
Evolving interfaces via gradients of geometry-dependent interior Poisson problems: application to tumor growth
P Macklin, J Lowengrub
Journal of Computational Physics 203 (1), 191-220, 2005
1102005
A review of cell-based computational modeling in cancer biology
J Metzcar, Y Wang, R Heiland, P Macklin
JCO clinical cancer informatics 2, 1-13, 2019
1012019
A new ghost cell/level set method for moving boundary problems: application to tumor growth
P Macklin, JS Lowengrub
Journal of scientific computing 35 (2), 266-299, 2008
1002008
An improved geometry-aware curvature discretization for level set methods: application to tumor growth
P Macklin, J Lowengrub
journal of Computational Physics 215 (2), 392-401, 2006
932006
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program
HuBMAP Consortium
Nature 574 (7777), 187, 2019
892019
The 2019 mathematical oncology roadmap
RC Rockne, A Hawkins-Daarud, KR Swanson, JP Sluka, JA Glazier, ...
Physical biology 16 (4), 041005, 2019
612019
BioFVM: an efficient, parallelized diffusive transport solver for 3-D biological simulations
A Ghaffarizadeh, SH Friedman, P Macklin
Bioinformatics, 2015
532015
A novel, patient-specific mathematical pathology approach for assessment of surgical volume: application to ductal carcinoma in situ of the breast
ME Edgerton, YL Chuang, P Macklin, W Yang, EL Bearer, V Cristini
Analytical cellular pathology 34 (5), 247-263, 2011
522011
An agent-based model for elasto-plastic mechanical interactions between cells, basement membrane and extracellular matrix
G D’ANTONIO, P Macklin, L Preziosi
Mathematical biosciences and engineering: MBE 10 (1), 75, 2013
422013
PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling
G Letort, A Montagud, G Stoll, R Heiland, E Barillot, P Macklin, A Zinovyev, ...
Bioinformatics 35 (7), 1188-1196, 2019
372019
The cancer microbiome: distinguishing direct and indirect effects requires a systemic view
JB Xavier, VB Young, J Skufca, F Ginty, T Testerman, AT Pearson, ...
Trends in cancer 6 (3), 192-204, 2020
352020
High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow
J Ozik, N Collier, JM Wozniak, C Macal, C Cockrell, SH Friedman, ...
BMC bioinformatics 19 (18), 81-97, 2018
322018
Integrative physical oncology
H Hatzikirou, A Chauviere, AL Bauer, A Leier, MT Lewis, P Macklin, ...
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 4 (1), 1-14, 2012
322012
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Articles 1–20