John Arul Prakash Sekar
John Arul Prakash Sekar
Postdoctoral Fellow, Mt. Sinai School of Medicine, Department of Genetics and Genomic Sciences
Verified email at mssm.edu - Homepage
Title
Cited by
Cited by
Year
BioNetGen 2.2: advances in rule-based modeling
LA Harris, JS Hogg, JJ Tapia, JAP Sekar, S Gupta, I Korsunsky, A Arora, ...
Bioinformatics 32 (21), 3366-3368, 2016
1152016
A blueprint for human whole-cell modeling
B Szigeti, YD Roth, JAP Sekar, AP Goldberg, SC Pochiraju, JR Karr
Current opinion in systems biology 7, 8-15, 2018
322018
Rule-based modeling of signal transduction: a primer
JAP Sekar, JR Faeder
Computational Modeling of Signaling Networks, 139-218, 2012
302012
Emerging whole-cell modeling principles and methods
AP Goldberg, B Szigeti, YH Chew, JAP Sekar, YD Roth, JR Karr
Current opinion in biotechnology 51, 97-102, 2018
282018
Automated visualization of rule-based models
JAP Sekar, JJ Tapia, JR Faeder
PLoS computational biology 13 (11), e1005857, 2017
122017
BpForms and BcForms: Tools for concretely describing non-canonical polymers and complexes to facilitate comprehensive biochemical networks
PF Lang, Y Chebaro, X Zheng, JAP Sekar, B Shaikh, DA Natale, JR Karr
arXiv preprint arXiv:1903.10042, 2019
42019
Energy-based modeling in BioNetGen
JAP Sekar, JS Hogg, JR Faeder
2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2016
32016
Visualizing regulation in rule-based models
JAP Sekar, JJ Tapia, JR Faeder
arXiv preprint arXiv:1509.00896, 2015
32015
BpForms and BcForms: a toolkit for concretely describing non-canonical polymers and complexes to facilitate global biochemical networks
PF Lang, Y Chebaro, X Zheng, JAP Sekar, B Shaikh, DA Natale, JR Karr
Genome biology 21 (1), 1-21, 2020
22020
Rule-based Modeling of Cell Signaling: Advances in Model Construction, Visualization and Simulation
J Sekar
University of Pittsburgh, 2015
22015
Structured spreadsheets with ObjTables enable data reuse and integration
JR Karr, W Liebermeister, AP Goldberg, JAP Sekar, B Shaikh
arXiv preprint arXiv:2005.05227, 2020
12020
An introduction to rule-based modeling of immune receptor signaling
JAP Sekar, JR Faeder
Systems Immunology: An Introduction to Modeling Methods for Scientists, 71, 2018
12018
Exact Parallelization of the Stochastic Simulation Algorithm for Scalable Simulation of Large Biochemical Networks
AP Goldberg, JAP Sekar, JR Karr
arXiv preprint arXiv:2005.05295, 2020
2020
Modeling the Role of Antigen Stimulation in Treg vs. Teff Fate Selection (36.52)
J Sekar, N Miskov-Zivanov, M Turner, P Morel, J Faeder
The Journal of Immunology 184 (1 Supplement), 36.52-36.52, 2010
2010
Mechanistic analysis of reaction network models
JJ Tapia, JAP Sekar, JR Faeder
Visualizing Rule-based Models
J Sekar, JR Faeder
Experimental Design in Rule-Based Models
JAP Sekar, JR Faeder
Modeling of Peripheral T Cell Differentiation
N Miskov-Zivanov, JAP Sekar, MS Turner, LP Kane, PA Morel, JR Faeder
Rule Refinement in BioNetGen
JAP Sekar, JR Faeder
Modular Construction of Rule-Based Models
JAP Sekar, JR Faeder
The system can't perform the operation now. Try again later.
Articles 1–20