| ProteomeXchange provides globally coordinated proteomics data submission and dissemination JA Vizcaíno, EW Deutsch, R Wang, A Csordas, F Reisinger, D Rios, ... Nature biotechnology 32 (3), 223-226, 2014 | 1883 | 2014 |
| A cross-platform toolkit for mass spectrometry and proteomics MC Chambers, B Maclean, R Burke, D Amodei, DL Ruderman, ... Nature biotechnology 30 (10), 918-920, 2012 | 1052 | 2012 |
| A common open representation of mass spectrometry data and its application to proteomics research PGA Pedrioli, JK Eng, R Hubley, M Vogelzang, EW Deutsch, B Raught, ... Nature biotechnology 22 (11), 1459-1466, 2004 | 830 | 2004 |
| The minimum information about a proteomics experiment (MIAPE) CF Taylor, NW Paton, KS Lilley, PA Binz, RK Julian, AR Jones, W Zhu, ... Nature biotechnology 25 (8), 887-893, 2007 | 676 | 2007 |
| The peptideatlas project F Desiere, EW Deutsch, NL King, AI Nesvizhskii, P Mallick, J Eng, S Chen, ... Nucleic acids research 34 (suppl_1), D655-D658, 2006 | 651 | 2006 |
| A guided tour of the Trans‐Proteomic Pipeline EW Deutsch, L Mendoza, D Shteynberg, T Farrah, H Lam, N Tasman, ... Proteomics 10 (6), 1150-1159, 2010 | 632 | 2010 |
| Design and implementation of microarray gene expression markup language (MAGE-ML) PT Spellman, M Miller, J Stewart, C Troup, U Sarkans, S Chervitz, ... Genome biology 3 (9), research0046. 1, 2002 | 544 | 2002 |
| PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows EW Deutsch, H Lam, R Aebersold EMBO reports 9 (5), 429-434, 2008 | 521 | 2008 |
| Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project CF Taylor, D Field, SA Sansone, J Aerts, R Apweiler, M Ashburner, ... Nature biotechnology 26 (8), 889-896, 2008 | 494 | 2008 |
| Development and validation of a spectral library searching method for peptide identification from MS/MS H Lam, EW Deutsch, JS Eddes, JK Eng, N King, SE Stein, R Aebersold Proteomics 7 (5), 655-667, 2007 | 463 | 2007 |
| mzML—a community standard for mass spectrometry data L Martens, M Chambers, M Sturm, D Kessner, F Levander, J Shofstahl, ... Molecular & Cellular Proteomics 10 (1), 2011 | 421 | 2011 |
| Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans J Malmström, M Beck, A Schmidt, V Lange, EW Deutsch, R Aebersold Nature 460 (7256), 762-765, 2009 | 400 | 2009 |
| A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas T Farrah, EW Deutsch, GS Omenn, DS Campbell, Z Sun, JA Bletz, ... Molecular & cellular proteomics 10 (9), 2011 | 399 | 2011 |
| iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates D Shteynberg, EW Deutsch, H Lam, JK Eng, Z Sun, N Tasman, ... Molecular & cellular proteomics 10 (12), 2011 | 372 | 2011 |
| Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach SA Carr, SE Abbatiello, BL Ackermann, C Borchers, B Domon, ... Molecular & Cellular Proteomics 13 (3), 907-917, 2014 | 353 | 2014 |
| Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea NS Baliga, R Bonneau, MT Facciotti, M Pan, G Glusman, EW Deutsch, ... Genome research 14 (11), 2221-2234, 2004 | 346 | 2004 |
| The human proteome project: current state and future direction P Legrain, R Aebersold, A Archakov, A Bairoch, K Bala, L Beretta, ... Molecular & cellular proteomics 10 (7), 2011 | 344 | 2011 |
| Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry F Desiere, EW Deutsch, AI Nesvizhskii, P Mallick, NL King, JK Eng, ... Genome biology 6 (1), R9, 2005 | 337 | 2005 |
| The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition EW Deutsch, A Csordas, Z Sun, A Jarnuczak, Y Perez-Riverol, T Ternent, ... Nucleic acids research, gkw936, 2016 | 329 | 2016 |
| A HUPO test sample study reveals common problems in mass spectrometry–based proteomics AW Bell, EW Deutsch, CE Au, RE Kearney, R Beavis, S Sechi, T Nilsson, ... Nature methods 6 (6), 423, 2009 | 307 | 2009 |
