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Ashlee Earl
Ashlee Earl
Broad Institute of MIT & Harvard
Verified email at broadinstitute.org
Title
Cited by
Cited by
Year
Structure, function and diversity of the healthy human microbiome
nature 486 (7402), 207-214, 2012
85312012
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement
BJ Walker, T Abeel, T Shea, M Priest, A Abouelliel, S Sakthikumar, ...
PloS one 9 (11), e112963, 2014
46102014
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
BJ Haas, D Gevers, AM Earl, M Feldgarden, DV Ward, G Giannoukos, ...
Genome research 21 (3), 494-504, 2011
29122011
A framework for human microbiome research
nature 486 (7402), 215-221, 2012
19942012
Genomic analysis identifies association of Fusobacterium with colorectal carcinoma
AD Kostic, D Gevers, CS Pedamallu, M Michaud, F Duke, AM Earl, ...
Genome research 22 (2), 292-298, 2012
16282012
A catalog of reference genomes from the human microbiome
Human Microbiome Jumpstart Reference Strains Consortium, KE Nelson, ...
Science 328 (5981), 994-999, 2010
7772010
Individual intestinal symbionts induce a distinct population of RORγ+ regulatory T cells
E Sefik, N Geva-Zatorsky, S Oh, L Konnikova, D Zemmour, AM McGuire, ...
Science 349 (6251), 993-997, 2015
6262015
Ecology and genomics of Bacillus subtilis
AM Earl, R Losick, R Kolter
Trends in microbiology 16 (6), 269-275, 2008
5652008
Relating the metatranscriptome and metagenome of the human gut
EA Franzosa, XC Morgan, N Segata, L Waldron, J Reyes, AM Earl, ...
Proceedings of the National Academy of Sciences 111 (22), E2329-E2338, 2014
5292014
Extensive diversity of ionizing-radiation-resistant bacteria recovered from Sonoran Desert soil and description of nine new species of the genus Deinococcus obtained from a …
FA Rainey, K Ray, M Ferreira, BZ Gatz, MF Nobre, D Bagaley, BA Rash, ...
Applied and environmental microbiology 71 (9), 5225-5235, 2005
4142005
Fap2 mediates Fusobacterium nucleatum colorectal adenocarcinoma enrichment by binding to tumor-expressed Gal-GalNAc
J Abed, JEM Emgård, G Zamir, M Faroja, G Almogy, A Grenov, A Sol, ...
Cell host & microbe 20 (2), 215-225, 2016
3882016
Gut microbiota utilize immunoglobulin A for mucosal colonization
GP Donaldson, MS Ladinsky, KB Yu, JG Sanders, BB Yoo, WC Chou, ...
Science 360 (6390), 795-800, 2018
3832018
Why is Deinococcus radiodurans so resistant to ionizing radiation?
JR Battista, AM Earl, MJ Park
Trends in microbiology 7 (9), 362-365, 1999
3481999
Emergence of epidemic multidrug-resistant Enterococcus faecium from animal and commensal strains
F Lebreton, W van Schaik, A Manson McGuire, P Godfrey, A Griggs, ...
MBio 4 (4), e00534-13, 2013
3402013
Analysis of Deinococcus radiodurans's Transcriptional Response to Ionizing Radiation and Desiccation Reveals Novel Proteins That Contribute to Extreme …
M Tanaka, AM Earl, HA Howell, MJ Park, JA Eisen, SN Peterson, ...
Genetics 168 (1), 21-33, 2004
3332004
Evaluation of 16S rDNA-based community profiling for human microbiome research
Jumpstart Consortium Human Microbiome Project Data Generation Working Group
PloS one 7 (6), e39315, 2012
2812012
Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes
G Giannoukos, DM Ciulla, K Huang, BJ Haas, J Izard, JZ Levin, J Livny, ...
Genome biology 13 (3), 1-13, 2012
2502012
Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates …
KA Cohen, T Abeel, A Manson McGuire, CA Desjardins, V Munsamy, ...
PLoS medicine 12 (9), e1001880, 2015
2382015
Biofilm Development with an Emphasis on Bacillus subtilis
KP Lemon, AM Earl, HC Vlamakis, C Aguilar, R Kolter
Bacterial biofilms, 1-16, 2008
2302008
Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance
AL Manson, KA Cohen, T Abeel, CA Desjardins, DT Armstrong, CE Barry, ...
Nature genetics 49 (3), 395-402, 2017
2262017
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Articles 1–20